Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00709 ATGGAACACTCTGTCCGAGCGGTGGAACAAATCGCTTGCTACAGTTTCACGAATAAAAAGCTTCTGGAGGAGGCTCTTACCCACTCCTCCTGTCTCGACTCGCCGTCTTACCAGCGGCTTGAGTTCGTCGGAGACGCAGTTCTCGCCGTAGCTTTGAGCAACTATATTTTTCTTGCTTACCCTGAACTCGAGCCAGGTGACCTCACTCCGCTTAGGGCTGCTAATATTAGCACCGAGAAACTTGCAAGGGTAGCGGTGCGCCATGGGTTATATCAGTACGTGAAGCGCAATGCCCCCGCTCTTGATGATAGGGTTAGAGAGTTTACAAATGCAATTTGTAAAGAAGGTGATGCAGTTGCACATGGTGGGTCGATGAAGGCTCCTAAGGTTCTCGCCGACATTGTAGAGTCTTTGGCAGCTGCTATTTACATGGACTTGAACTTTGATTTACATAGAATGTGGTTGATCTTTAAGCATCTGTTGGAGCCCATTGTTACCCCTAAAGACTTGCAGCGGCAACCACAACCTGTCTCCCGGCTTATCGAGCTTTGCCAAAAGCATGGAAAACAAGTGAATATCGAGTATGGGAAGAGCGATAACAAGAGCACTGCAAGTATATATGTGGATGATCAATTTGTTACATCGTCTTCTTCGGACCAGAAGGGCATCGCAAAGCTTAATGCTTGCAAGGCAGCTTTGGAAAAGTTGTCAAAATACGTTTCATTAGATTATGAAAAGAGTGGAGTACTCAACCACATTGATGGATCTTTCGAGATTGATGGAGCGAAACATAGATTAAATGAGATTTGTTCCAAGAGAAAGTGGCCGAAACCAAATTACAGCATTGAGAAGGACAGAGGGCCATCACACGGGAAAAAATTCGTATCATCGGTGCAAATTGCTTTCACCGAGGGCATTCTTTCTATGACTGGAGACGAAAAGTCGCGAGTAAAGGATGCTGATAATTCCGCTGCCTCCCTGATGATCCGAGCCTTACAAGAAGGTAACTATTTATAA 1017 45.53 MEHSVRAVEQIACYSFTNKKLLEEALTHSSCLDSPSYQRLEFVGDAVLAVALSNYIFLAYPELEPGDLTPLRAANISTEKLARVAVRHGLYQYVKRNAPALDDRVREFTNAICKEGDAVAHGGSMKAPKVLADIVESLAAAIYMDLNFDLHRMWLIFKHLLEPIVTPKDLQRQPQPVSRLIELCQKHGKQVNIEYGKSDNKSTASIYVDDQFVTSSSSDQKGIAKLNACKAALEKLSKYVSLDYEKSGVLNHIDGSFEIDGAKHRLNEICSKRKWPKPNYSIEKDRGPSHGKKFVSSVQIAFTEGILSMTGDEKSRVKDADNSAASLMIRALQEGNYL 338
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55345489 55348350 - Bda021846.1 Bda05g00709 7021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00709 338 Pfam Ribonuclease III domain 38 145 IPR000999 GO:0004525|GO:0006396
Bda05g00709 338 Gene3D - 173 244 - -
Bda05g00709 338 SMART DRBM_3 176 237 IPR014720 -
Bda05g00709 338 SMART DRBM_3 262 333 IPR014720 -
Bda05g00709 338 Gene3D Ribonuclease III domain 1 172 IPR036389 GO:0004525|GO:0006396
Bda05g00709 338 SUPERFAMILY RNase III domain-like 2 166 IPR036389 GO:0004525|GO:0006396
Bda05g00709 338 ProSitePatterns Ribonuclease III family signature. 38 46 IPR000999 GO:0004525|GO:0006396
Bda05g00709 338 Pfam Double-stranded RNA binding motif 176 236 IPR014720 -
Bda05g00709 338 ProSiteProfiles Ribonuclease III family domain profile. 5 147 IPR000999 GO:0004525|GO:0006396
Bda05g00709 338 SUPERFAMILY dsRNA-binding domain-like 261 332 - -
Bda05g00709 338 SUPERFAMILY dsRNA-binding domain-like 129 239 - -
Bda05g00709 338 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 261 334 IPR014720 -
Bda05g00709 338 SMART riboneu5 20 170 IPR000999 GO:0004525|GO:0006396
Bda05g00709 338 PANTHER DICER-RELATED 6 329 - -
Bda05g00709 338 Pfam double strand RNA binding domain from DEAD END PROTEIN 1 262 333 - -
Bda05g00709 338 ProSiteProfiles Double stranded RNA-binding domain (dsRBD) profile. 175 238 IPR014720 -
Bda05g00709 338 Gene3D - 260 335 - -
Bda05g00709 338 PANTHER RIBONUCLEASE 3-LIKE PROTEIN 2-RELATED 6 329 - -
Bda05g00709 338 CDD RIBOc 20 170 IPR000999 GO:0004525|GO:0006396
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00709 - - - rcu:8278929 437.187
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00329 Bda-Chr2:43463425 Bda05g00709 Bda-Chr5:55345489 5.07E-26 dispersed
Bda15g00962 Bda-Chr15:17741445 Bda05g00709 Bda-Chr5:55345489 6.07E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g551 . . . . . . Bma10g00566 . Cmo16g00936 . . . . . . . . . . . . . . . Cla10g00491 Cam10g0482 Cec10g0500 Cco10g0486 Clacu10g0502 Cmu10g1329 Cre10g0732 . . . . . Csa03g00495 . Cme06g02859 Blo07g00892 . Bda05g00709 . . Bpe03g00781 . . Sed08g1364 . . . Cma16g00900 . Car16g00876 Cpe14g00724 . Bhi11g00594 Tan01g1726 Cmetu06g2572 . Hepe06g0003 . . . . . . . . . Lsi05g00580 . Chy06g01831 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004196 1 1 1 2 2 1 1 1 1 2 1 1 1 2 2 1 1 2 1 1 4 2 1 0 1 1 0 3 3 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00709 Bda_Chr05 FPKM 21.539507 23.073267 14.308265 13.071405 9.138341 8.751348 10.852244 18.562279 19.475163