Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00711 ATGGCTGCTCCCAGGGTGGAAACAGCTGCCGTGGCTGCTCTCCGGTCGGTTTTGCTCCGAGTCCGGCAGGCGGCGGAGCGGTCTGGTAGAGAGTCAAATAAGATTAGAGTCGTGGCAGTGTCGAAGACGAAGCCCGTTTCGCTAATACGGGAAGTGTATGATGCCGGTCATCGATGCTTCGGTGAGAACTACGTCCAAGAGATTGTTGATAAAGCTCCTCAGCTTCCTGATGACGTTGAATGGCATTTTGTTGGGCATTTGCAGAGCAACAAAGTCAAATCCCTTCTTGCTGCAGTCCCAAAGCTGGCCATGGTTGAGGGTGTAGACAATGAGAAGCTCGCGAATCATCTTGACCGTGGAGTTTCAAACCTTGGAAGGGACCCTTTGAAGGTTTTGGTCCAAGTAAACACCAGTGGAGAAGTGTCGAAATCTGGAATTGAGCCTTCTAAATGTGTTGAACTTGCTGAACATGTAAAATTCAACTGCCCGAATCTAGAGTTTTCAGGTTTCATGACAATAGGAATGCCAGACTACACATCGACTCCGAAGAACTTCATGACATTGTCAAAATGCAGAGTTGAGGTTTGCAAGGCACTTGAAATGGCAGAAGATGACTGTGAATTGTCGATGGGTATGTCCAGTGATTTTGAGTTGGCTGTAAGTTTTCCTCTCTTGCTCATACTTAACTTCCATAATAATTAA 702 46.72 MAAPRVETAAVAALRSVLLRVRQAAERSGRESNKIRVVAVSKTKPVSLIREVYDAGHRCFGENYVQEIVDKAPQLPDDVEWHFVGHLQSNKVKSLLAAVPKLAMVEGVDNEKLANHLDRGVSNLGRDPLKVLVQVNTSGEVSKSGIEPSKCVELAEHVKFNCPNLEFSGFMTIGMPDYTSTPKNFMTLSKCRVEVCKALEMAEDDCELSMGMSSDFELAVSFPLLLILNFHNN 233
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55367648 55370618 - Bda021849.1 Bda05g00711 7023

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00711 233 PIRSF YBL036c_PLPDEIII 1 223 IPR011078 GO:0030170
Bda05g00711 233 Hamap Pyridoxal phosphate homeostasis protein. 12 232 IPR011078 GO:0030170
Bda05g00711 233 Pfam Alanine racemase, N-terminal domain 19 219 IPR001608 -
Bda05g00711 233 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 9 222 IPR011078 GO:0030170
Bda05g00711 233 TIGRFAM TIGR00044: pyridoxal phosphate enzyme, YggS family 20 220 IPR011078 GO:0030170
Bda05g00711 233 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170
Bda05g00711 233 Gene3D Alanine racemase 2 222 IPR029066 -
Bda05g00711 233 SUPERFAMILY PLP-binding barrel 10 221 IPR029066 -
Bda05g00711 233 PANTHER PYRIDOXAL PHOSPHATE HOMEOSTASIS PROTEIN 9 222 - -
Bda05g00711 233 CDD PLPDE_III_YBL036c_euk 14 220 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00711 K06997 yggS, PROSC; PLP dependent protein - csv:101217387 358.992
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00928 Bda-Chr2:49477669 Bda05g00711 Bda-Chr5:55367648 3.76E-111 dispersed
Bda05g00711 Bda-Chr5:55367648 Bda13g00748 Bda-Chr13:9085216 6.94E-22 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g547 . . . . . . Bma10g00564 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00894 . Bda05g00711 . . Bpe03g00783 . . . . . . . . . Cpe14g00742 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002558 2 7 2 3 2 2 1 2 2 1 0 2 1 1 1 2 2 2 2 1 2 2 2 2 2 2 2 2 3 2 59