Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00712 ATAGAAGAGTTAAAGGCTGAAATGGAGAGAATTAATTCGGAAAACCATCGTTTGAGATACATGCTCAATCAGATGAGTAACAATTATTACACCCTTCAGATGCAGCTTCTTGCTCTCACGCAGAAGCAACAAATTAACAAAGATCGTGAACAATTCAAACGTCACGAGATGATTAGCGAACGATCTGAGGAAGATAATAAGAACAACGAAGGAAGTGGAAAAATTACCGGAAAATTGATGGATTTGGTTCGTCAAAAAGATGATCAAATTTCAAATTCTTCTTCAGAAACAAAGTCTGCTGAAAGTTTTGGGACTCCAAAAGAAAATCACATGGCGTTTAAAATTCACAGCACAAGTGAGGAAGGTTTGGAGAGTGTGGATAATAATGAGAGAGAAAGTAGGGTTAGTGAGAGAAATGTAGGAGAGGAAAGCTCAAACCAAGCTGCTATTTCATGGCGACTGCCTAACAATGTAGAACGACCATCCGAATCGATGATGTTGACACAGAAAGCTCGAGTATCGGTCCGGGCACGATCTGAGGCTTCCATGATATCAGATGGGTGTCAATGGAGGAAGTATGGACAGAAAATGGCAAAAGGGAATCCATGTCCTCGAGCTTATTATCGATGTACAATGGGGGTTAATTGCCCCGTTCGAAAGCAAGTACAAAGAAACGCAGAAGATCAAACGATTCTGATAACCACGTATGAAGGGCAGCACAACCATCCTCTTCCTCAAGCGGCAATGGCTATGGCCACAACCACTTCAGCCGCCGCATCAATGCTCCTCTCTGGTCCAATGGCTAGCCTAGATGGCTCAATAAACCCAACACCTTTTGCTGGATCCATGTTTAATTTCTCACCAAATTTAGCCACTCTTTCAGCTTCAGCCCCGTTTCCAACTGTCACGTTAGATCTCACTAACAGAGCACAAGGTCTTACCCAAAATTCCTCATCTTTCCCAGAAAATGTTTCTCGGTTTTCGGGCTCCGAACTGTCTAGTCTTGGACATGGTCGGACTCAGATGCCTTCAATGGCTGATACAGTTAGCGCAGCCACTGCTGCCATTACAGAAGACCCTAATTTGAGAGCAGCTCTTGTGGCTGCCATTTCCTCAGTCATCGGAAACGCTCCGTTGAGCAGGAATATTAATAGTTCAAGAAACAATGATGAATAA 1176 43.28 IEELKAEMERINSENHRLRYMLNQMSNNYYTLQMQLLALTQKQQINKDREQFKRHEMISERSEEDNKNNEGSGKITGKLMDLVRQKDDQISNSSSETKSAESFGTPKENHMAFKIHSTSEEGLESVDNNERESRVSERNVGEESSNQAAISWRLPNNVERPSESMMLTQKARVSVRARSEASMISDGCQWRKYGQKMAKGNPCPRAYYRCTMGVNCPVRKQVQRNAEDQTILITTYEGQHNHPLPQAAMAMATTTSAAASMLLSGPMASLDGSINPTPFAGSMFNFSPNLATLSASAPFPTVTLDLTNRAQGLTQNSSSFPENVSRFSGSELSSLGHGRTQMPSMADTVSAATAAITEDPNLRAALVAAISSVIGNAPLSRNINSSRNNDE 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55382542 55384422 + Bda021850.1 Bda05g00712 7024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00712 391 SMART WRKY_cls 184 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00712 391 Coils Coil 1 21 - -
Bda05g00712 391 MobiDBLite consensus disorder prediction 56 148 - -
Bda05g00712 391 Gene3D WRKY domain 169 246 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda05g00712 391 MobiDBLite consensus disorder prediction 86 104 - -
Bda05g00712 391 Pfam WRKY DNA -binding domain 186 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00712 391 SUPERFAMILY WRKY DNA-binding domain 177 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Bda05g00712 391 MobiDBLite consensus disorder prediction 56 71 - -
Bda05g00712 391 ProSiteProfiles WRKY domain profile. 179 245 IPR003657 GO:0003700|GO:0006355|GO:0043565
Bda05g00712 391 PANTHER WRKY TRANSCRIPTION FACTOR 6-LIKE 2 377 - -
Bda05g00712 391 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 2 377 IPR044810 GO:0003700
Bda05g00712 391 MobiDBLite consensus disorder prediction 113 139 - -
Bda05g00712 391 MobiDBLite consensus disorder prediction 313 342 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00712 - - - sind:105167998 320.472
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00712 Bda12g00922 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00494 Bda-Chr5:51733979 Bda05g00712 Bda-Chr5:55382542 2.47E-30 dispersed
Bda05g00712 Bda-Chr5:55382542 Bda15g00959 Bda-Chr15:17679033 1.05E-90 dispersed
Bda12g00568 Bda-Chr12:9895955 Bda05g00712 Bda-Chr5:55382542 8.71E-28 dispersed
Bda12g00922 Bda-Chr12:40323364 Bda05g00712 Bda-Chr5:55382542 0 wgd
Bda15g00953 Bda-Chr15:17560389 Bda05g00712 Bda-Chr5:55382542 2.19E-79 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g540 . . . . Bpe09g00165 . Bma10g00563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00896 . Bda05g00712 Bda12g00922 . Bpe03g00784 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016612 2 0 1 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15904 PF03106 WRKY 3.10E-24 CL0274 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00712 Bda_Chr05 FPKM 19.259809 20.356123 10.268499 10.479137 67.766495 65.115013 69.072166 4.994804 4.925062