Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00714 ATTGAAAACTTCATAAACTTTTGTCTCAGAGTGGGAATTTCTTACTATGACTCTAGTATTCGCCAACTTCATGTGCTGGAAGTTTGGGAAGACGGTAGCACAGATTTCCCCTTGATTGATCTGGTAAAGTATCAAGCTAAGCCCCTGATAATTTACACAAGCACTAAATCTGAAGAATCCTTTTTATCTGCTTTACAGCATAGTGATGGCACAAGTGAGGCTCCACAAGTGAAACTGGTGAAAAGTTCAATATTTAGCTATGAGCAGGCCTGGCACAGATTGATATACCTTAGAGTGACAGGAATGGATGATGGGTTAAACATCAAGGAGCGAATATGCTATTTAAGTTCAATGATGGACATGGGAAGTGATGTTGAAGTTCGTGCAAGTGGGGGTCTTCTTGCCATATTAGAGAATGAACGGATAATAGATACTCTTGAGCAAAAGGAACATGGAACTTCATCAATTACAATTGATTCTGTCGTAGAAATTTCATTAAATACGTTTCTTAAACTTGATGCTGCTGCACTAGAAGCATTGCAGATTTTCCAAACAGACAAACATCCAAGCCATATGGGCATTGGCAGAGCCAAAGAAGGGTGGTTCTCAGTGTTTGGCATGATGAATAAGTGCCTAACGCCCATGGGTAGGCGACTATTGAGAAACTGGTTTTTGAGACCAATTCTCGACCTTGACAATTTGAACAGACGTCTCAATGTTATATCATTCTTTTATGCGACCGAAGAATTGATGCTTTCCTTACGGGAGACTTTGAAGTTGGTAAAGGATGTTCCACACATACTCAAGAAATTCAACTCTCCAAGCTTCATGTGTACACCCAATGATTGGACAGCATTTGTAAAGAGCATCAACTCACTCTTATATATGAACAAGATATTTGAAGTTGGAATTTCAGAGAATCTTAGGGAGCTAGCAAAGTACTTAGATTTGGACATAATTGAGAAGGCTAATTCATGCTTTACCTCAGAGTTGGCTTATGTATACGAATTGATAATTGGCGTACTTGATGTTGGCAGAGCAAAGGAGAAGGGATATGAAACACTTGTCAAGGAGGGTTTTTGTGATGAGTTGGATGAACTGAGGCAGATTTATGAGGAATTGCCTAGATTTCTAGCAGAGGTTACATCAATTGAAGTTGAGAGGCATCCTCAGCTGTATAAAGATAAACTTGTCCCGAGTATTATATATATACACCAAATAGGATACTTGATGTGCATTTTTGAGGAAAAGCTTGATGAAACGACATTGGAGACACTAAAAGATTTTGAATTTGCTTTTAGTGATGTTGATGGAGATATGAGAAGATTTTTTTATCGTACGCCAAAGTCACGAGAGTTGGATAATCTGCTTGGAGATATTTATCATAAAATTCTAGACATGGAGAGGGCAATTATTAGAGACTTGGTGTCGCACATACTACTCTTCTCAGTGCATCTTCTTACTGCTGTCAGTTTTGCAGCTGAACTTGACTGCTTTTTGTCTTTGGCGCTTGTTGCTCGTCAAAGCAACTATGTAAGGCCTGTTTTGACTGCAGATAACTTGCTTGACATAAAAAATGGAAGACATGTTTTGCAGGAAATGACAGTGGACACTTTTATTCCTAATGACACAAAAATTTCAGATGATGGAAGAGTTAACATCATCACTGGTCCAAACTACTCCGGGAAAAGTGTATACATAAAGCAGGTAGCTTTAATTGTTTTCTTGTCTCACATTGGGAGTTTTGTACCAGCAGATGCTGCAACTGTGGGTTTGACTGACAGAATATTTTGTGCAATGGGAAGCAAGCTTATGACTGCAGAACAGTCAACCTTTATGATTGATCTACATCAAGTAGGGATGATGTTAAGACAGGCAACTTCTCAATCTTTGTGTCTCTTGGATGAATTTGGTAAAGGTACACTAACTGAAGATGGTATTGGCCTGCTTGGTGGAACCATCAATCACTTTGCTACCTGTAATGAACCTCCAAAGGTGCTGGTGTGCACACATTTGACTGAGTTACTTGATGAAAGTTACTTATCAACGTCCGAGACAATCAAATTTTACACCATGAGCATGCTAAGGCCTGACAGACATTCTACAGAATCTGAAGACATAGTATTTCTGTATCGTTTGGTACCTGGGCACGCTCTTCTTAGCTATGGTGTTCCTGAGGAAGTTATCAGGAGAGCAGCATTTGTCTTGGATGCTATTCAGAACAATAAGCATGTTGAGCGACAATTTAATGAAAAAATCTCTGCACAAGATAAGCTATATAAGAAATCGGTGGATAAGATGTTGGCGTTTGATGTTTTCAATGGAGATCTCACCCTTTTCTTTCAGGATGTATTTCCTTCTTAA 2364 39.04 IENFINFCLRVGISYYDSSIRQLHVLEVWEDGSTDFPLIDLVKYQAKPLIIYTSTKSEESFLSALQHSDGTSEAPQVKLVKSSIFSYEQAWHRLIYLRVTGMDDGLNIKERICYLSSMMDMGSDVEVRASGGLLAILENERIIDTLEQKEHGTSSITIDSVVEISLNTFLKLDAAALEALQIFQTDKHPSHMGIGRAKEGWFSVFGMMNKCLTPMGRRLLRNWFLRPILDLDNLNRRLNVISFFYATEELMLSLRETLKLVKDVPHILKKFNSPSFMCTPNDWTAFVKSINSLLYMNKIFEVGISENLRELAKYLDLDIIEKANSCFTSELAYVYELIIGVLDVGRAKEKGYETLVKEGFCDELDELRQIYEELPRFLAEVTSIEVERHPQLYKDKLVPSIIYIHQIGYLMCIFEEKLDETTLETLKDFEFAFSDVDGDMRRFFYRTPKSRELDNLLGDIYHKILDMERAIIRDLVSHILLFSVHLLTAVSFAAELDCFLSLALVARQSNYVRPVLTADNLLDIKNGRHVLQEMTVDTFIPNDTKISDDGRVNIITGPNYSGKSVYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCAMGSKLMTAEQSTFMIDLHQVGMMLRQATSQSLCLLDEFGKGTLTEDGIGLLGGTINHFATCNEPPKVLVCTHLTELLDESYLSTSETIKFYTMSMLRPDRHSTESEDIVFLYRLVPGHALLSYGVPEEVIRRAAFVLDAIQNNKHVERQFNEKISAQDKLYKKSVDKMLAFDVFNGDLTLFFQDVFPS 787
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55539164 55548825 + Bda021856.1 Bda05g00714 7026

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00714 787 SMART DNAend 199 535 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bda05g00714 787 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 10 771 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Bda05g00714 787 PANTHER MUTS PROTEIN HOMOLOG 5 10 771 - -
Bda05g00714 787 Gene3D - 170 398 - -
Bda05g00714 787 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 511 740 IPR027417 -
Bda05g00714 787 SUPERFAMILY DNA repair protein MutS, domain III 173 510 IPR036187 -
Bda05g00714 787 Pfam MutS domain V 554 741 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda05g00714 787 CDD ABC_MSH5_euk 523 724 - -
Bda05g00714 787 PIRSF MSH2 5 771 IPR011184 GO:0005524|GO:0006298|GO:0030983
Bda05g00714 787 ProSitePatterns DNA mismatch repair proteins mutS family signature. 630 646 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda05g00714 787 Pfam MutS domain III 176 503 IPR007696 GO:0005524|GO:0006298|GO:0030983
Bda05g00714 787 SMART mutATP5 550 737 IPR000432 GO:0005524|GO:0006298|GO:0030983
Bda05g00714 787 Gene3D - 511 773 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00714 K08741 MSH5; DNA mismatch repair protein MSH5 - vvi:100252044 1258.43
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00714 Bda-Chr5:55539164 Bda07g01864 Bda-Chr7:36055148 4.29E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g533 . . . . . . Bma10g00555 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1154 . . . . . Blo07g00899 . Bda05g00714 . . Bpe03g00787 . . . . . . . . . Cpe14g00746 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004808 1 7 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 4 1 1 1 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00714 Bda_Chr05 FPKM 0.0 0.0 0.0 0.0 11.427447 0.0 17.575756 0.0 0.0