Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00716 ATGGTTCAGATCGTGAAGAGGAAGAAGAAGGGAAGGCCATCTAAGGCAGATCTGGCACGCCGGTTGAGCGGCTCTCCGGCAACTGAACCGTTTGTCCGACGAAGTCACCGGCAGAGAAATGTGAGGTACAACATTGACTACGATGACTATCTGGACGACGATTACGATGACGAGGAAGAGGACGAGAGACTGCAGAAGAAGCTCAAGCTCAAGCTGGTGGTGAAGCTGAACCAGGGCGGAGAAGGAGCTGAGCCGGAGCTAAGCAAAGCTCGCACAGAGTTGCGTGGTGCGCACGCGCTGGACGACGTTGAGTCTCCGTCGGAGGAGGATGAGTCGGAAAGGAAGCCGTTGAAGAAGAGGAGGATTGGCCGTGTTAATGAGGACGAAGAAGACGACGACGACGATGAAAATCGCGCGGACGCTGAGGATGAAGATGAAGATATCCTAGGGACGACGAACAAAAGTGGGCTCAAAAGGGTCCGAATCTGTTTCAGGTTTTCTTTCATTGTTTTTTTCATCTACCGTCTTGATTTGCTCTGTTTTTTATGGTTTAATGACGAGAGTTTTGATTGTTTTTTGTCAGGGACTCCACCTCATACTCAATCTGGGATACCGCTTCCTGATAAGAAAACACTGGAATTGATTCTCGACAAACTTCAGAAGAAAGACATTTATGGTGTGTACGCCGAACCAGTTGATCCAGAAGAGCTCCCTGATTATCACGATGTAATCGAGCATCCAATGGACTTTGCTACGGTGAGGAAGAAATTAGCTAGTGGAGCTTATTCCACTTTGGAACATTTTGCGACTGATGTATTCCTTATTTGCTCAAATGCTATGCTATATAATGCACCAGATACCATATACTATAAACAGGCTCATACCATACAAGAGCTTGCCAAGAAGAAATTTGAAAGATTAAGAGTTGATTATGAATCCTCTGAAAAAGAGCTCAAGCTAGAGCAGAAAACAAAATCCAATTGCTTAGTTAAGAAACAGATAAAGAAGCTGCCAGGCCGGATCTCACAGGAACCAATGGGATCAGATTTTTCCTCAGGTGCAACTCTTGCCACTGCTGGAGATATTCAGAACTGCTCCTTTCCGGCCCAAGGTGGTGGTTATGAGAAAAATAGCAATATTGATGGGCATGTTGAAGGGAATTCTTCTTTATTTGAGAATAATTTGGAGAAAGTTGAAGAATTATTCTCAGGGAAGAGTTTCTCATCAAGATTAGGGAGGAAAGCAGTGCTGCTTGACGAAAACCGTCGAGCAACATATAATATTTCTAATCAGCCAGAAGTCAGATCAGAATCAATATTAACTACCTTTGAAGGAGAAATGAAGCAACTTGTTGCAGTTGGCCTTCATGCGGAATATTCATATGCCAGGAGCCTGGCTCGCTTTGCTGCGACTCTTGGGCCAGTTGCTTGGAAAGTTGCCTCCAAGAGGATTGAGCAGGCCCTTCCTGCAGGTTGTGAATTTGGCTTAGGTTGGGTTGGAGAATATGAGCCACTTCCAACTCCAGTACTTCTATTTGAAAATCGTAACCAGAAGGAATCTGGTCTATTTACTCCTGCGTGTTCCGCTGCTGAATTGAGAAAGAATGACATATTGTTGAAGATTCCTTTTCCTACCGGGGAAAATGGTACCAATGGGCCTGTTTCCGAGGTGAAACAATCTTTGTTGAATCCTGTCAGGCGGGATATTTTAGATGGAAAACCATCATTGTTTGGCTCTGGAGGGATCAAACACAGTTTTCCTTTAAATTCTACGTATCAGCAGCAAAACCTACAACACCAGCAACCCAACAATTTTACCAAGCCAAGCAAGATGAAAAATCAGTTTGAATTAAACTTGTTGCCTTCCCCCAATCAGAATCATGCTGATCCTGTCCCAGAAAAGCAATCTAATTTGCAATCTATTGCTTCCAGGTCCAAAGACTCGGCCCCTGTTAAAATGAGTCTTCTATCTTCTGGATCTTTTAAACTGCCAGATTCTAATGGAGTTGTTGCTGGAGGACTACCCAACGGAAAAGTTGTGACTGATTGCTTAAATAGTCATACTGTTATTGTTTCTTCTGATGGTCTTCCTAGTCAAATTGCTAGAGCGGCAGCATACTCCTCCCATGGACAAGAACAGGGTCTCACTGACCCAGTTCAGTTAATGAAATCATTGAATGAAAAGGCTCAAAGGCAACAGAAATACATCAGTCAAGCTCCGATTGAAGCTCCACCGGTCACGAAAGTAGAGTCCAATTCCATTAGGAAAACTGAATCCAACAATGCTTCCATGGCAGCTGCCCGGGCATGGATGTCTGTTGGAGCTGGAGGTTTTAAAAAAATTGCAGAAAATTCTAGCCTGCCAAATAATCACATATCTGCAGACTCGTTATACAACCCAGCGAGGGACTTCCCTCCTCAAATCACTAGAGTTCATGGGGAGCCTCCTTGTGCTGGAGGGACCAAATTTCATTCTGAGAAGAACGACGGAAACCTGTTGCAGGCATGTTTACCTCAGTCTGTTCGTAAGGGTACGGAAGCACAGCTCCAAAGCCAACCTAAAGTTTTTCCCCAGTTAGCTCAAGCCGACTTGTCTAGGTTTCAAGTGCATCCCCATTGGCAAGGTCTCGGCCCGCTTGCTCAGCCGAGGCAGAAGCAAGAAATGCTTCCCCCAGACTTGAACATTGGTTTCCAGAGTCCAAGTTCTCCAGTGAGACATTCCTCTGGCGTCCAAGTAGACTCACAGCAGCCCGACCTGGCGTTGCAACTTTGA 2772 45.17 MVQIVKRKKKGRPSKADLARRLSGSPATEPFVRRSHRQRNVRYNIDYDDYLDDDYDDEEEDERLQKKLKLKLVVKLNQGGEGAEPELSKARTELRGAHALDDVESPSEEDESERKPLKKRRIGRVNEDEEDDDDDENRADAEDEDEDILGTTNKSGLKRVRICFRFSFIVFFIYRLDLLCFLWFNDESFDCFLSGTPPHTQSGIPLPDKKTLELILDKLQKKDIYGVYAEPVDPEELPDYHDVIEHPMDFATVRKKLASGAYSTLEHFATDVFLICSNAMLYNAPDTIYYKQAHTIQELAKKKFERLRVDYESSEKELKLEQKTKSNCLVKKQIKKLPGRISQEPMGSDFSSGATLATAGDIQNCSFPAQGGGYEKNSNIDGHVEGNSSLFENNLEKVEELFSGKSFSSRLGRKAVLLDENRRATYNISNQPEVRSESILTTFEGEMKQLVAVGLHAEYSYARSLARFAATLGPVAWKVASKRIEQALPAGCEFGLGWVGEYEPLPTPVLLFENRNQKESGLFTPACSAAELRKNDILLKIPFPTGENGTNGPVSEVKQSLLNPVRRDILDGKPSLFGSGGIKHSFPLNSTYQQQNLQHQQPNNFTKPSKMKNQFELNLLPSPNQNHADPVPEKQSNLQSIASRSKDSAPVKMSLLSSGSFKLPDSNGVVAGGLPNGKVVTDCLNSHTVIVSSDGLPSQIARAAAYSSHGQEQGLTDPVQLMKSLNEKAQRQQKYISQAPIEAPPVTKVESNSIRKTESNNASMAAARAWMSVGAGGFKKIAENSSLPNNHISADSLYNPARDFPPQITRVHGEPPCAGGTKFHSEKNDGNLLQACLPQSVRKGTEAQLQSQPKVFPQLAQADLSRFQVHPHWQGLGPLAQPRQKQEMLPPDLNIGFQSPSSPVRHSSGVQVDSQQPDLALQL 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55556696 55561417 + Bda021858.1 Bda05g00716 7028

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00716 923 Gene3D - 207 328 IPR036427 GO:0005515
Bda05g00716 923 MobiDBLite consensus disorder prediction 1 15 - -
Bda05g00716 923 MobiDBLite consensus disorder prediction 895 923 - -
Bda05g00716 923 MobiDBLite consensus disorder prediction 128 147 - -
Bda05g00716 923 PRINTS Bromodomain signature 253 271 IPR001487 GO:0005515
Bda05g00716 923 PRINTS Bromodomain signature 237 253 IPR001487 GO:0005515
Bda05g00716 923 PRINTS Bromodomain signature 271 290 IPR001487 GO:0005515
Bda05g00716 923 Coils Coil 297 324 - -
Bda05g00716 923 PANTHER BROMODOMAIN CONTAINING PROTEIN 1 923 - -
Bda05g00716 923 ProSitePatterns Bromodomain signature. 226 282 IPR018359 -
Bda05g00716 923 MobiDBLite consensus disorder prediction 619 649 - -
Bda05g00716 923 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 1 923 - -
Bda05g00716 923 SUPERFAMILY Bromodomain 199 308 IPR036427 GO:0005515
Bda05g00716 923 MobiDBLite consensus disorder prediction 97 127 - -
Bda05g00716 923 MobiDBLite consensus disorder prediction 97 149 - -
Bda05g00716 923 ProSiteProfiles Bromodomain profile. 220 290 IPR001487 GO:0005515
Bda05g00716 923 CDD Bromodomain 208 304 - -
Bda05g00716 923 SMART bromo_6 201 309 IPR001487 GO:0005515
Bda05g00716 923 Pfam Bromodomain 214 294 IPR001487 GO:0005515
Bda05g00716 923 MobiDBLite consensus disorder prediction 885 923 - -
Bda05g00716 923 MobiDBLite consensus disorder prediction 1 39 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00716 K22184 BRD9; bromodomain-containing protein 9 - qsu:112014188 929.858
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00716 Bda12g00914 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00322 Bda-Chr3:2749994 Bda05g00716 Bda-Chr5:55556696 8.59E-74 dispersed
Bda05g00303 Bda-Chr5:45580551 Bda05g00716 Bda-Chr5:55556696 4.52E-08 dispersed
Bda05g00716 Bda-Chr5:55556696 Bda14g00648 Bda-Chr14:4851309 5.22E-85 dispersed
Bda12g00914 Bda-Chr12:39847068 Bda05g00716 Bda-Chr5:55556696 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g527 . . . . Bpe09g00169 . . . . . Cma01g01124 . Car01g00998 Car09g00874 Sed04g3216 Cpe06g00774 Cpe02g00777 Bhi09g01656 Tan01g4563 Cmetu01g2650 . Hepe01g1265 Mch11g1197 . . . . . . . . . . Cone14ag1152 Cone15ag1169 Lsi02g01898 Csa07g01101 . . Blo07g00901 . Bda05g00716 Bda12g00914 . Bpe03g00789 . . . Cmo01g01175 Cmo09g00956 . . . . . . . . . . . . . Cla09g01015 Cam09g1072 Cec09g1072 Cco09g1090 . . Cre09g1036 . . . Cme01g01024
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005656 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 39
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00716 Bda_Chr05 FPKM 0.0 0.0 0.0 0.075425 0.0 0.0 0.0 0.0 0.0