Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00718 ATGGCCAAGAGCTCCTTCAAATTGGAACATCCTCTCGAAAGGAGGCAGGCAGAAGCAGCTCGAATTAGGGAGAAGTATCCTGATAGAATCCCAGTTATTGTGGAGAAGGCTGAAAGAAGTGACATATCCGATATTGACAAGAAGAAATACTTGGTTCCTGCCGATTTAACCGTTGGGCAGTTTGTGTACGTTGTTCGTAAGAGGATCAAGCTGAGCGCTGAAAAAGCGATTTTCATCTTTGTCAAGAATATTTTGCCACCTACTGCTGCATTGATGTCGGCAATCTATGAAGAAAACAAGGACGAAGACGGTTTCCTCTACATGACATACAGTGGCGAAAACACGTTTGGATCGTTTTAA 360 43.33 MAKSSFKLEHPLERRQAEAARIREKYPDRIPVIVEKAERSDISDIDKKKYLVPADLTVGQFVYVVRKRIKLSAEKAIFIFVKNILPPTAALMSAIYEENKDEDGFLYMTYSGENTFGSF 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55584316 55585503 - Bda021860.1 Bda05g00718 7030

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00718 119 CDD Ubl_ATG8 12 114 - -
Bda05g00718 119 SUPERFAMILY Ubiquitin-like 3 117 IPR029071 -
Bda05g00718 119 PANTHER MICROTUBULE-ASSOCIATED PROTEINS 1A/1B LIGHT CHAIN 3-RELATED 1 117 IPR004241 -
Bda05g00718 119 Gene3D - 1 117 - -
Bda05g00718 119 Pfam Autophagy protein Atg8 ubiquitin like 14 117 IPR004241 -
Bda05g00718 119 PANTHER AUTOPHAGY-RELATED PROTEIN 1 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00718 K08341 GABARAP, ATG8, LC3; GABA(A) receptor-associated protein - qsu:112014194 225.713
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00718 Bda12g00912 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00705 Bda-Chr4:55851820 Bda05g00718 Bda-Chr5:55584316 3.68E-22 dispersed
Bda05g00718 Bda-Chr5:55584316 Bda09g00097 Bda-Chr9:1842203 1.02E-72 dispersed
Bda12g00912 Bda-Chr12:39837480 Bda05g00718 Bda-Chr5:55584316 2.49E-80 wgd
Bda15g00948 Bda-Chr15:17512718 Bda05g00718 Bda-Chr5:55584316 3.96E-65 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g525 . . . . Bpe09g00171 . Bma10g00551 . . . . . . . . . . . . . . . . . . . . . . . . . . . Cone15ag1167 . . . . Blo07g00902 . Bda05g00718 Bda12g00912 . Bpe03g00790 . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000267 6 8 5 7 6 4 7 4 4 5 4 4 5 5 5 6 4 9 4 3 5 4 4 3 2 2 4 9 8 5 151
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00718 Bda_Chr05 FPKM 8.247536 9.458808 4.293099 3.756576 9.287503 8.606892 9.381165 13.560919 13.238638