Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00725 ATGCAACAGCCAGGTCCCGGTATGGTTCCATCGTCACAGATGCCTCCTATGTCGTCCGATCACTTTGCTCAACAGTACCAACAGCACCAGCAGTGGATGATGAATCAGCCGCAACTACAAACCCCGCCACAGCCGATTCCGCCTCCAGCTGGGTGGACCCCGCAGGCTGTAGCTCCGCCCATGCAAGCGCAGGGCCACCAGTACCCAGGGGACGCTAACGCTGGATCTAGCGAGGTTAGGTCGCTCTGGATCGGAGACTTGCAACAGTGGATGGATGAAAACTATATCATTAACTGCTTCTCTCACACTGGCGAGGTTGTTTCTGTCAAGGTGATTCGTAATAGGATGACAGGCATGCCTGAGGGATATGGTTTTGTTGAGTTTGTCAGTCATGCTGCTGCTGAGAAAGTCTTACAAAGTTACAATGGCACACTAATGCCGAATAGTGAACAGAATTTTCGATTGAATTGGGCTACCCTTGGTGCTGGCGAGAAACGACAAGATGACGGTCCTGACTTTACAATTTTTGTAGGAGATTTGGCAGCTGATGTTAATGATTACACACTTCAAGAAACATTTAGAGCAGTGTACCATTCTGTGAAAGGTGCAAAAGTTGTCACTGATAGAACCACAGGACGTTCTAAAGGTTATGGTTTTGTTAGGTTTAGTGATGAAAATGAACAAATGCGTGCCATGACGGAAATGAATGGTATCTATTGTTCTTCGAGACCCATGCGTGTTGGACCTGCTGCTACCAAGAAATCTGTTGGAGGATCACAATACCAGAATGGTATTTACCAGAATACTTCAGGAAATCCTGGGGAAAATGATCCAAATAATACAACCGTGAGTGTTCTATTTCTTCGTTTATATTTAATTCATTTGTGGATATGTCTCTTACAATGTGGAGTGCAGATATTTGTTGGGGGATTGGACTCCAGTGTTACAGATGATGTGTTGAGACAAGTTTTTAGCCAATTTGGGGAGCTGGTTCATGTGAAAATACCCTTGGGAAAACGCTGTGGCTTTGTTCAGTTTGCTAACAGAATGAGTGCGGAGCAAGCATTATCAATGTTGAATGGAACTCAACTAGGTGGACAAAGCATTCGGCTTTCATGGGGCCGGAGTCCTTCCAATAAGCAACAGGAAGATCAGTCTCAGTGGAATGTTAGTGGGTATTATGGGTATGGACAAGGATACGACACTTATGGATATACTCAAAATCCCCAAGAGGCTCCTAATATGTATTATGGAGGGTACCCTGGCTATGGTAATTATCAGCAGCCAGGTTCTTATCAACAACCACATCAGGTAAATGCTCCTTTGGCTTATTTATCTTCGCTACTTTTAAAAATTCTGTACTTTTATTGTGAAATTGACACAATAGTACTAGGGCTTTAA 1401 44.18 MQQPGPGMVPSSQMPPMSSDHFAQQYQQHQQWMMNQPQLQTPPQPIPPPAGWTPQAVAPPMQAQGHQYPGDANAGSSEVRSLWIGDLQQWMDENYIINCFSHTGEVVSVKVIRNRMTGMPEGYGFVEFVSHAAAEKVLQSYNGTLMPNSEQNFRLNWATLGAGEKRQDDGPDFTIFVGDLAADVNDYTLQETFRAVYHSVKGAKVVTDRTTGRSKGYGFVRFSDENEQMRAMTEMNGIYCSSRPMRVGPAATKKSVGGSQYQNGIYQNTSGNPGENDPNNTTVSVLFLRLYLIHLWICLLQCGVQIFVGGLDSSVTDDVLRQVFSQFGELVHVKIPLGKRCGFVQFANRMSAEQALSMLNGTQLGGQSIRLSWGRSPSNKQQEDQSQWNVSGYYGYGQGYDTYGYTQNPQEAPNMYYGGYPGYGNYQQPGSYQQPHQVNAPLAYLSSLLLKILYFYCEIDTIVLGL 466
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55622836 55626766 - Bda021867.1 Bda05g00725 7037

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00725 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 173 252 IPR000504 GO:0003723
Bda05g00725 466 MobiDBLite consensus disorder prediction 1 74 - -
Bda05g00725 466 CDD RRM1_SECp43_like 81 159 - -
Bda05g00725 466 CDD RRM2_SECp43_like 172 251 - -
Bda05g00725 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 376 IPR000504 GO:0003723
Bda05g00725 466 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 23 286 - -
Bda05g00725 466 MobiDBLite consensus disorder prediction 40 55 - -
Bda05g00725 466 CDD RRM3_NGR1_NAM8_like 306 374 - -
Bda05g00725 466 Gene3D - 79 159 IPR012677 -
Bda05g00725 466 PANTHER POLYADENYLATE-BINDING PROTEIN RBP45A-RELATED 305 429 - -
Bda05g00725 466 SUPERFAMILY RNA-binding domain, RBD 64 159 IPR035979 GO:0003676
Bda05g00725 466 SUPERFAMILY RNA-binding domain, RBD 305 404 IPR035979 GO:0003676
Bda05g00725 466 Gene3D - 300 410 IPR012677 -
Bda05g00725 466 Gene3D - 161 283 IPR012677 -
Bda05g00725 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 175 245 IPR000504 GO:0003723
Bda05g00725 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 150 IPR000504 GO:0003723
Bda05g00725 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 370 IPR000504 GO:0003723
Bda05g00725 466 SMART rrm1_1 174 248 IPR000504 GO:0003723
Bda05g00725 466 SMART rrm1_1 81 156 IPR000504 GO:0003723
Bda05g00725 466 SMART rrm1_1 305 372 IPR000504 GO:0003723
Bda05g00725 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 80 160 IPR000504 GO:0003723
Bda05g00725 466 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 23 286 - -
Bda05g00725 466 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 305 429 - -
Bda05g00725 466 MobiDBLite consensus disorder prediction 1 39 - -
Bda05g00725 466 SUPERFAMILY RNA-binding domain, RBD 162 274 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00725 - - - jre:108984045 567.77
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00725 Bda12g00903 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00725 Bda-Chr5:55622836 Bda08g00827 Bda-Chr8:12514962 2.59E-124 dispersed
Bda12g00903 Bda-Chr12:39764547 Bda05g00725 Bda-Chr5:55622836 0 wgd
Bda05g00725 Bda-Chr5:55622836 Bda07g00359 Bda-Chr7:4590208 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g501 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Blo07g00909 Blo10g00824 Bda05g00725 Bda12g00903 . Bpe03g00795 . Bma14g00340 . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002064 4 5 3 6 2 2 0 1 1 0 0 2 2 2 2 3 2 6 1 2 1 2 2 2 1 2 2 3 2 2 65
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00725 Bda_Chr05 FPKM 22.080654 24.929253 17.625216 18.23584 22.382795 18.572544 23.003332 23.492947 23.616735