Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00743 AAATTTGACCAGAAATTTGATGAAGAAATTCAAAACCTGAAAGAAGACGTGAAGAACCTGTTGGCAGCTCCTACCCAGAAGCCCTCACAGAAACTAAACTTGATCGATTCAATCCAACGGTTAGGAGTTGCAGATCACTTCCAATCAGAAATCCAAGGCTTGTTGGACCAAGTTAACAAGACTTGTGTTGACTCTTTCACTAATGAAAATGACGGCAGTCTTCCGTCGGATGCTCTTCTCTTTCGATTGCTCAGACAACAGGGTTACAAAGCTTCGACCGGTGATATATTCAAGAAATACACAGACAGGGACGGAAAATTCAAGGAAAGTCTAGTTGAGGACGTGAGAGGACTATTGAATTTGTATGAAGCAGCATATTTCAGTGTTCATGGAGAAGATATACTCGATGAAGCCCTTAACTTTGCCACAAAAAAACTGGAAGTCATTGTAGGTAAGTTAAGCTACCCTCTTTCCGAAGAAGTGAAATATGCTCTAAAGCATCCTCTCCGACGAGGCATGCCGAGGCTTGAAGCGAGGCACTTCATGTCGATTTACCAGGAAGATCCCTCTCACAGTGATGTCCTTCTTACCTTTGCAAAACTGGATTATAACATATTTCAAAAACTACACAAGGAGGAACTTAAAGAAATCTCTAGGTGGTGGAAGGATTTAGAGTTTCCAAGCGTGCTACCCTTTGCAAGAGATAGAATTGCTGAATGTTACTTTTGGGCTTTGATTATAAATCCTGAGCCTCAATACTCAGTTCTCAGAAGGTTCATGGCCAAAGTCATTCAAATGGCCTCAGTTCTCGATGATATATATGACGTTCACGGAACACCTGAAGAAATTCGACTCCTGACTGACGCAATTGATAGGTGGGATATTAGCGCTCAAGATCAACTACCTGACTATCTTAAATTTTACTATCAAAAAGTGTTGTGTCTTTATGCCGATTTTGAAAGAGAGAACGGTATCGAGAGTGAATCATTCCGAATGCTCCGTGCAAAAGATGGGATGAAAGGACAAGCAAAGGCCTACTTTGGTGAAGCAAATTGGTTCCACGCAGGCCATATACCCACCATTGATGGGTATTATGAGTTTGCTTTGCCTTCCACTTGCTATCGTTTTTTTTCGGTCACTGCCTTTCTTGGCATGGGAGATGTCATTCCAAACGAGGCTTTCAATTGGATATTTACAGAGCCCAAGATTCTTCGCGGGGCTGAAATCATCGGAAGGCTCATGAACGACGTCGTCTCCCACAAGTTTGAGCAAGTTCGGGGCCACACAGCATCTGCCATGGAATGTTACATCAAACAATATGGAGTTTCGGAGGAGGAGGCACGCGCTGCCCTTGAGAAGCGAGTAGATGATGCGTGGAAGGATATAAACGAGTGTTGTCTGAAACCTACTGAGTTCTCGATGACCGTGTTGTCGCCTATTGTTAGTCTCGCTAGGGCTAGCCATGTCAACTACAGGGACGAAGATGGATACACGATCACAGCTGGAGAAACTAAACGTTACATTACTTCTCTTGTCGTAGACCCTGTAACACTTTGA 1557 43.35 KFDQKFDEEIQNLKEDVKNLLAAPTQKPSQKLNLIDSIQRLGVADHFQSEIQGLLDQVNKTCVDSFTNENDGSLPSDALLFRLLRQQGYKASTGDIFKKYTDRDGKFKESLVEDVRGLLNLYEAAYFSVHGEDILDEALNFATKKLEVIVGKLSYPLSEEVKYALKHPLRRGMPRLEARHFMSIYQEDPSHSDVLLTFAKLDYNIFQKLHKEELKEISRWWKDLEFPSVLPFARDRIAECYFWALIINPEPQYSVLRRFMAKVIQMASVLDDIYDVHGTPEEIRLLTDAIDRWDISAQDQLPDYLKFYYQKVLCLYADFERENGIESESFRMLRAKDGMKGQAKAYFGEANWFHAGHIPTIDGYYEFALPSTCYRFFSVTAFLGMGDVIPNEAFNWIFTEPKILRGAEIIGRLMNDVVSHKFEQVRGHTASAMECYIKQYGVSEEEARAALEKRVDDAWKDINECCLKPTEFSMTVLSPIVSLARASHVNYRDEDGYTITAGETKRYITSLVVDPVTL 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55839805 55841800 + Bda021888.1 Bda05g00743 7055

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00743 518 CDD Terpene_cyclase_plant_C1 3 515 IPR044814 GO:0010333|GO:0016102
Bda05g00743 518 Gene3D - 26 191 IPR036965 GO:0010333|GO:0016829
Bda05g00743 518 SFLD Isoprenoid Synthase Type I 193 517 - -
Bda05g00743 518 PANTHER OS04G0344100 PROTEIN-RELATED 7 502 - -
Bda05g00743 518 Coils Coil 3 23 - -
Bda05g00743 518 SUPERFAMILY Terpenoid synthases 191 516 IPR008949 -
Bda05g00743 518 Pfam Terpene synthase, N-terminal domain 4 165 IPR001906 GO:0010333|GO:0016829
Bda05g00743 518 PANTHER TERPENE SYNTHASE 2-RELATED 7 502 - -
Bda05g00743 518 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 4 191 IPR008930 -
Bda05g00743 518 Pfam Terpene synthase family, metal binding domain 196 461 IPR005630 GO:0000287|GO:0010333|GO:0016829
Bda05g00743 518 Gene3D Farnesyl Diphosphate Synthase 4 506 IPR008949 -
Bda05g00743 518 SFLD Terpene Cyclase Like 1 C Terminal Domain 193 517 IPR034741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00743 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 zju:107435184 563.918
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00743 Bda07g00331 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00743 Bda-Chr5:55839805 Bda12g00853 Bda-Chr12:38315317 0 dispersed
Bda12g00851 Bda-Chr12:38220171 Bda05g00743 Bda-Chr5:55839805 1.45E-56 dispersed
Bda05g00742 Bda-Chr5:55763568 Bda05g00743 Bda-Chr5:55839805 0 tandem
Bda04g00319 Bda-Chr4:47073170 Bda05g00743 Bda-Chr5:55839805 0 transposed
Bda09g00763 Bda-Chr9:13816797 Bda05g00743 Bda-Chr5:55839805 0 transposed
Bda12g00870 Bda-Chr12:39301177 Bda05g00743 Bda-Chr5:55839805 0 transposed
Bda02g00570 Bda-Chr2:46514736 Bda05g00743 Bda-Chr5:55839805 1.31E-77 wgd
Bda05g00743 Bda-Chr5:55839805 Bda07g00325 Bda-Chr7:4343716 3.36E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g403 . . Bda07g00331 . . . . Bma13g00950 . . . . . . . . . . . . . . . . . . . . . . . . Cone9ag0113 . . . . . . Blo07g00921 . Bda05g00743 . . Bpe03g00808 . . . . . . Cma16g00830 . . . . . . . . . . . . . . . . . . Lsi05g00657 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00743 Bda_Chr05 FPKM 4.499779 4.924572 6.855037 6.495879 14.871773 15.028553 15.410775 10.283605 9.193896