Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00747 ATGGATCTTCTGCAAAATGCATACTCATATGCTTCCGATGAGGAAGACGAACCCAAGGAGGAAGAAGAAGAAGAACCTTCACCGAAGAGGCTTAATGCTCTTCCTTCTTCGACGGCAGTCAAACACCTGAACTTACCTCGCAACACTTGTGTCTCACGTTACCCCAACACCCGTCCGGCTCTCCAAACGGAAGTCCCGGTTCCAGGACGCTATGTTTCCAAGAGAGAGCGAGCATTAATGGATTCAGCTTCAGCTTCGGTCCCTAGGGTTCTTGAATCGAGCTTGAATCCTTCAGTCCCTGCTTCGCCTGTTTTGGGAAGTCTTTCGGATTCAAATCTTCCACATGAAATCACATCATTGCTGAGATATAAAATGAAGGGCCGTTCACAACTAGCACAAACGTTTGAAGGAATGCATATTCCTCTAGATGGACATTCAAAAGGAGTCAACACAATAAAATGGTCTCCTAGTCATTCTCATCTCCTTGCTTCTGCTGGGATGGATCACAAAATTTACATATGGAATGTTTGGAACGGAGACCAGAAGGTAGCTCGCACATTAAACTTTCACAAAGCTTCAGTGAAAGATGTGAAATGGTCACCTCAAGGACCGTTCGTTCTTTCTTGTGGTTATGATTGTGTATCAAGATTGATTGATGTGGAGAAGGCCATGGAGATTCAGAAATTTGAGGAAGATGGAGTTGTTGGTGTTTTAAAGTTTAGCCCGACAGACACTAACACCTTCCTCTCTGGTGGATCTAAAGGTAGCCTTAGATTATGGGATATTAGAATCGGAAAGGTGGTCCATGAATACATTCGGCGGCTTGGTCAGATTCTAGATGTTGAATTCACCATGAATGGAAAGCAGTTCATATCTTCAAGTGATGTGTCTGGAATTAACGTCAGCGAAAATTCTATCATTGTTTGGGATGTCTCGAGACAAATTCCTCTTTCTAATCAAGTGTACGTTGAAGCATACACTTGTCCATGTGTGAGGTGCCACCCATTTGATCCAAGTTTTGTTGCCCAATCAAATGGGAATTACATTGCGATTTTCTCTTTGACCCCACCTTTCAAGCTAGACAAGTATAAGAGGTTCGAAAGCCACTGTGTCTCTGGCTTTCCCGTTAAGTGCAGTTTCAGCAATGACGGGGAGACTCTTGTCTCTGGTTCTTCAGATGGCTCGATTTACTTCTACAATTACAGAACGACCAAGATTTTGCGTAAAATTGAAGCATACAAGCATTCGAGTATAGATGTCGATATGCATCCAATCTTGCCTGGTGTAGTTGCTTCCTGCAATTGGAATGGAGATGTCACTGTCTTTGGCTAA 1332 43.32 MDLLQNAYSYASDEEDEPKEEEEEEPSPKRLNALPSSTAVKHLNLPRNTCVSRYPNTRPALQTEVPVPGRYVSKRERALMDSASASVPRVLESSLNPSVPASPVLGSLSDSNLPHEITSLLRYKMKGRSQLAQTFEGMHIPLDGHSKGVNTIKWSPSHSHLLASAGMDHKIYIWNVWNGDQKVARTLNFHKASVKDVKWSPQGPFVLSCGYDCVSRLIDVEKAMEIQKFEEDGVVGVLKFSPTDTNTFLSGGSKGSLRLWDIRIGKVVHEYIRRLGQILDVEFTMNGKQFISSSDVSGINVSENSIIVWDVSRQIPLSNQVYVEAYTCPCVRCHPFDPSFVAQSNGNYIAIFSLTPPFKLDKYKRFESHCVSGFPVKCSFSNDGETLVSGSSDGSIYFYNYRTTKILRKIEAYKHSSIDVDMHPILPGVVASCNWNGDVTVFG 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55954026 55956510 - Bda021896.1 Bda05g00747 7059

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00747 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 270 IPR001680 GO:0005515
Bda05g00747 443 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 1 442 - -
Bda05g00747 443 MobiDBLite consensus disorder prediction 1 38 - -
Bda05g00747 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 184 IPR001680 GO:0005515
Bda05g00747 443 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 176 - -
Bda05g00747 443 ProSitePatterns Trp-Asp (WD) repeats signature. 162 176 IPR019775 -
Bda05g00747 443 Pfam WD domain, G-beta repeat 185 217 IPR001680 GO:0005515
Bda05g00747 443 Pfam WD domain, G-beta repeat 142 175 IPR001680 GO:0005515
Bda05g00747 443 Pfam WD domain, G-beta repeat 366 400 IPR001680 GO:0005515
Bda05g00747 443 SUPERFAMILY WD40 repeat-like 139 442 IPR036322 GO:0005515
Bda05g00747 443 SMART WD40_4 264 310 IPR001680 GO:0005515
Bda05g00747 443 SMART WD40_4 128 175 IPR001680 GO:0005515
Bda05g00747 443 SMART WD40_4 403 443 IPR001680 GO:0005515
Bda05g00747 443 SMART WD40_4 222 261 IPR001680 GO:0005515
Bda05g00747 443 SMART WD40_4 180 219 IPR001680 GO:0005515
Bda05g00747 443 SMART WD40_4 359 400 IPR001680 GO:0005515
Bda05g00747 443 Gene3D - 124 443 IPR015943 GO:0005515
Bda05g00747 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 187 228 IPR001680 GO:0005515
Bda05g00747 443 ProSiteProfiles Trp-Asp (WD) repeats profile. 379 409 IPR001680 GO:0005515
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00747 K24742 WDR25; WD repeat-containing protein 25 - qsu:112024714 561.607
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00747 Bda-Chr5:55954026 Bda10g01021 Bda-Chr10:44353954 6.43E-50 dispersed
Bda05g00747 Bda-Chr5:55954026 Bda07g01614 Bda-Chr7:29964728 3.25E-50 transposed
Bda05g00747 Bda-Chr5:55954026 Bda07g01599 Bda-Chr7:29678061 3.60E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g385 . . . . . . Bma10g00525 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1113 Cone15ag1127 . . . . Blo07g00929 . Bda05g00747 . . Bpe03g00812 . . . . . . . Car04g00870 . . Cpe01g00843 . . . . . . . . . . . . . . . . Chy06g01770 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008063 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 1 1 1 1 1 2 2 2 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00747 Bda_Chr05 FPKM 19.010984 22.672602 14.9655 15.873314 17.20739 16.944597 16.832249 21.753311 19.737202