Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00748 ATGGCGGACGAGTTTCAAACTAGTGGAAGCTGGTGGGATTCGTCGTCAATGGAGTCTGTTTCAGTTTCCAGCAGTTCTTCTTTCGTCTTCCATGATACCCAGAAGCTTCAAGATTCTGATTCTTCAGCCGTTGATCCAAATCTGCAGATGATGGGTTTAGGGCTTTCTTCCCCCACCATAGATTGGAACCAATCCTTACTTCTTGGAGAGAAGTCCGAAATGAGTTTCAGATCGATGCTTCAAGAAAATATGAACTCAAGTAGCAATTTTCACCAACAAAGTGGGCCAAATCAATGGAGAGACAGACTCTTTTCTGGAGATAATTCATCAGAAAACGAGTTTAAGCCATTAAATCGAGGTTTTTCGTTAGATCAACAGGAGTTTAGCGCTCACGATTACAGTGGAGTTGACCCCACGGCGACATGTTTAGGGTTATCTTCGAGTTTTCAAATGGATTCATCAGCTCTGTATGGAAATTCAACTACGATTCTACAAGGTTTCGAAAATCAGAATCAGCAAAATTCAAACTCCATGGAATTCTCTTATGGAGCAAATTTTCTCAAGAATTCTAATGAATTCAAGCCTTCTTCTTGGTCTTCTTCTAAAGTTCCTCAGTTTTTAAGAGCTTTACCTCCTAAGTTGCACTTTTCTAACAACGCTCCCTTCTGGAATGCTTCAGAAGCCGCCATTAAAGACACCAAACCAAGCTTTTTTCCTTCTCTGCAAACACAATTCTACTCACAAAACTTCGAGGAAAAGCCTAAGCAGAATATATCTGAAACACGTGATTCAGTAACTGTAATAAAGAGAAGTGGGAGCCAACAAAATTCCAAAAGGCCAAGAAGTGAAACACCATCGCCATTGCCAGCTTTCAAGGTGAGAAAAGAGAAGATGGGGGACAGAGTCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACTGCCTCAGTGCTTTCTGAAGCCCTTGACTATATCAAGTTCCTCCATGAACAAGTTAGTGTTTTAAGCACTCCATACATGAAAAGTGGAGCTGCAATACAACATCAACATAATCATTTTTGTCGTTGGCAGAATTTAGACAAGTCCAAGGAGGCAGAAGGGCTGAAGCAAGATCTCAGAAGCCGAGGGCTGTGTTTAGTACCAGTTTCAAGCACATTCCCAGTGACTCACGAAAGCACAGTTGATTTTTGGACGCCAACATTTGGAGGAACATTCAGATGA 1230 41.63 MADEFQTSGSWWDSSSMESVSVSSSSSFVFHDTQKLQDSDSSAVDPNLQMMGLGLSSPTIDWNQSLLLGEKSEMSFRSMLQENMNSSSNFHQQSGPNQWRDRLFSGDNSSENEFKPLNRGFSLDQQEFSAHDYSGVDPTATCLGLSSSFQMDSSALYGNSTTILQGFENQNQQNSNSMEFSYGANFLKNSNEFKPSSWSSSKVPQFLRALPPKLHFSNNAPFWNASEAAIKDTKPSFFPSLQTQFYSQNFEEKPKQNISETRDSVTVIKRSGSQQNSKRPRSETPSPLPAFKVRKEKMGDRVTALQQLVSPFGKTDTASVLSEALDYIKFLHEQVSVLSTPYMKSGAAIQHQHNHFCRWQNLDKSKEAEGLKQDLRSRGLCLVPVSSTFPVTHESTVDFWTPTFGGTFR 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 55964150 55966355 + Bda021897.2 Bda05g00748 7060

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00748 409 MobiDBLite consensus disorder prediction 251 283 - -
Bda05g00748 409 PANTHER TRANSCRIPTION FACTOR BHLH123-LIKE ISOFORM X1 19 399 - -
Bda05g00748 409 MobiDBLite consensus disorder prediction 85 108 - -
Bda05g00748 409 CDD bHLH_AtbHLH_like 288 339 IPR045239 -
Bda05g00748 409 MobiDBLite consensus disorder prediction 251 289 - -
Bda05g00748 409 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 19 399 - -
Bda05g00748 409 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 349 IPR036638 GO:0046983
Bda05g00748 409 Gene3D - 292 354 IPR036638 GO:0046983
Bda05g00748 409 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00748 - - - mesc:110601182 482.256
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00748 Bda12g00875 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00748 Bda-Chr5:55964150 Bda10g00820 Bda-Chr10:42604381 5.03E-30 dispersed
Bda07g01554 Bda-Chr7:28818738 Bda05g00748 Bda-Chr5:55964150 2.04E-33 transposed
Bda12g00875 Bda-Chr12:39446790 Bda05g00748 Bda-Chr5:55964150 0 wgd
Bda02g00568 Bda-Chr2:46494677 Bda05g00748 Bda-Chr5:55964150 6.41E-66 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g384 . . . . Bpe09g00206 . Bma10g00524 Bma13g00994 Cmo16g00923 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1110 Cone15ag1124 . . . . Blo07g00930 Blo10g00790 Bda05g00748 Bda12g00875 . Bpe03g00813 . . . . . . . Car04g00871 . . Cpe01g00844 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003787 2 3 2 3 2 1 2 1 1 1 1 1 2 2 1 2 1 2 1 1 1 1 1 1 1 1 1 2 3 1 45
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00748 Bda_Chr05 FPKM 12.684492 9.387637 8.935752 9.256369 8.643982 6.452869 11.470153 8.816871 6.749557