Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00756 ATGCAAGTGGAGGTTAGCAAGCATACTGAAGGATATAAAGATCAGACGATACGTCCAAATGGATTGCCAGAGTCCTTGATTAGATATGATGCTCGTCAAAAAGATGTGGCCAAAAATTCAGTAACTGAACTTGTTCAAGCCATGAAGAGACCACGATCACTCAGTGAATCATCAAATTATCGTGCGTTTAGAAAATCAGGTGGAGGCATGCAAGAGGAAAGACCAGAGCCACCAGTGAGGAGGAAATCAGAGAGTGTTGCTCCGGCCTTGCGAAATTCACAAGGCAGTACTCGAAGATCAATGCAAAGTATTAGTGAATTGCCTGACAAGAAGCAAAGAAAATCCATCCGTCTCTCTTTCATGGGGATAATTCGTAAAAATCAGCCGAATGGTGATAGCTTTGGAGATGGCGTAAATGTGGATTTTGAGGAGAGTGACGACGCCGATTACGCCGATGATGAGAGGCCTGAGAGTTTTGATGACAAAGTTAGGCAGAGGGAAATGAGAAAGGGTATTGATCTTGCTACAACACTTGAGCGTATCGAGAAGAACTTTGTCATTACTGATCCAAGGCTGCCTGATAATCCTATTATATTTGCTTCCGATAGCTTCTTGGAGCTAACAGAGTACAGCCGAGAAGAAATCTTAGGAAGAAATTGCAGGTTCTTGCAAGGGCCAGAGACTGATCGAGGGACTGTAAGGAAGATAAGAGAGGCTATCGACAACCAAACTGAAGTTACGGTGCAGCTCATCAACTACACAAAAAGCGGGAAAAAATTCTGGCATCTGTTTCATCTACAAGCTATGCGAGATCAAAAGGGTGAAGTTCAGTATTTCATTGGAGTCCAACTAGATGGGAGTCAACACGTGGAGCCTCTTAAAAATTGTATTCCGGAAGATACTGCGATTGAGAGTGAAAAATTGGTAAGAGAAACAGCAGAAAACGTTGATGTGGCCGTCAGAGAACTTCCAGATGCTAATATGAAACCGGAAGATTTATAA 1002 42.81 MQVEVSKHTEGYKDQTIRPNGLPESLIRYDARQKDVAKNSVTELVQAMKRPRSLSESSNYRAFRKSGGGMQEERPEPPVRRKSESVAPALRNSQGSTRRSMQSISELPDKKQRKSIRLSFMGIIRKNQPNGDSFGDGVNVDFEESDDADYADDERPESFDDKVRQREMRKGIDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDRGTVRKIREAIDNQTEVTVQLINYTKSGKKFWHLFHLQAMRDQKGEVQYFIGVQLDGSQHVEPLKNCIPEDTAIESEKLVRETAENVDVAVRELPDANMKPEDL 333
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56066818 56068651 - Bda021907.1 Bda05g00756 7068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00756 333 MobiDBLite consensus disorder prediction 1 25 - -
Bda05g00756 333 ProSiteProfiles PAC domain profile. 244 298 IPR000700 -
Bda05g00756 333 Gene3D PAS domain 158 323 - -
Bda05g00756 333 MobiDBLite consensus disorder prediction 87 103 - -
Bda05g00756 333 ProSiteProfiles PAS repeat profile. 174 243 IPR000014 -
Bda05g00756 333 MobiDBLite consensus disorder prediction 47 112 - -
Bda05g00756 333 SMART pac_2 247 289 IPR001610 -
Bda05g00756 333 Pfam PAS domain 193 285 IPR000014 -
Bda05g00756 333 SUPERFAMILY PYP-like sensor domain (PAS domain) 186 285 IPR035965 -
Bda05g00756 333 MobiDBLite consensus disorder prediction 127 161 - -
Bda05g00756 333 MobiDBLite consensus disorder prediction 67 81 - -
Bda05g00756 333 PANTHER PHOTOTROPIN-1 1 333 - -
Bda05g00756 333 TIGRFAM sensory_box: PAS domain S-box protein 195 285 IPR000014 -
Bda05g00756 333 CDD PAS 185 285 IPR000014 -
Bda05g00756 333 PANTHER FLIPPASE KINASE 1-RELATED 1 333 - -
Bda05g00756 333 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00756 Bda-Chr5:56066818 Bda13g00562 Bda-Chr13:6565897 1.44E-28 dispersed
Bda05g00756 Bda-Chr5:56066818 Bda09g01486 Bda-Chr9:46684330 1.00E-30 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00756 K20715 - jre:108989640 509.22