Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00769 ATGGGCGGTTTGCGGGTTGAAAACGCATCGGCTGCCTTAGCTCTGCATAATTCCAAGCAGGGGCAAGAATCAGCCGTGATTAAGTCCGGCTCGGAGACCAAACCCAAGAAGAAAATTTGCTGTGCTTGTCCAGACACTAAGAAACTCCGAGATGAATGCATTGTGGAACATGGCGAGAAGGCTTGTACGAAATGGATCGAGGCGCATCTTAAGTGCCTCCGTGCTGAGGGATTCAACGTGTAA 243 50.21 MGGLRVENASAALALHNSKQGQESAVIKSGSETKPKKKICCACPDTKKLRDECIVEHGEKACTKWIEAHLKCLRAEGFNV 80
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56169627 56169869 - Bda021919.1 Bda05g00769 7081

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00769 80 PANTHER CYTOCHROME C OXIDASE COPPER CHAPERONE 1 80 - -
Bda05g00769 80 Pfam Cytochrome C oxidase copper chaperone (COX17) 36 80 IPR007745 GO:0005507|GO:0005758|GO:0016531
Bda05g00769 80 ProSiteProfiles Coiled coil-helix-coiled coil-helix (CHCH) domain profile. 40 80 - -
Bda05g00769 80 PANTHER CYTOCHROME C OXIDASE COPPER CHAPERONE 1 80 IPR007745 GO:0005507|GO:0005758|GO:0016531
Bda05g00769 80 Gene3D CytochromE C oxidase copper chaperone 14 80 - -
Bda05g00769 80 SUPERFAMILY Cysteine alpha-hairpin motif 28 80 IPR009069 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00769 K02260 COX17; cytochrome c oxidase assembly protein subunit 17 - cpap:110812310 130.183
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00769 Bda-Chr5:56169627 Bda12g00846 Bda-Chr12:38099120 9.90E-43 dispersed
Bda12g00844 Bda-Chr12:38090008 Bda05g00769 Bda-Chr5:56169627 2.16E-41 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g224 . . . . . . Bma10g00501 Bma13g00957 . Cmo04g00969 . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1065 . . Csa03g00632 . . . . Bda05g00769 . . Bpe03g00835 . . . . . Cma04g00902 . . . . . Bhi11g00775 Tan01g1556 . . . . . . . . . . . . . . Chy06g01694 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005211 3 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 2 2 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00769 Bda_Chr05 FPKM 16.049227 18.249956 19.303068 20.414545 29.724798 27.208054 27.851894 24.147093 25.348785