Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00771 ATGCCATTGCTTGCGCGAAAGCCTTCGGAGACGCATTTTGCTAGTTCAAGGGAAAAGGAAAGGCTTCTCCCCTTTATCCGTCGCTACATTTGCCGAAGAAGGGTAGCAATGCTCCTCTTAGCTGCCCTTGCTCTTTTGATTTTCATATCTGGTTCCTTGACAGTTAATAAAGGTTTTTCAAACGTTAATGAACGAATAGGAAACATTAAACTGAATGAACGTGGGACATCGAGAGACTTGGGATTTTCAGTTTTTCCAAGAATGGAAGATAGGGGCAGAAGAAGGTCTTCTAGAGCTGAAAGAGCAACAAATCAAGACCAAACTAGAACTCAACACCGGCATCATCCCCGCCTCCCTGTTTCTCGTCTGCACAAATCTTTTACAACTAATACTGATCTTACACATTTCCCCCTATTGCCCCATCCGTGTGACAAGTTTGCTCAAGATTTGGACCAAGACGTAACTTGTCCAGTATGTTATGTAACTGTGGGTCAGGCTATTGCTCGTATGCCTAGCTTTTTTTCAGCATCTCCTGTGCTTCACAGTCTAACATATGTTCATGACGAAAATCCAATAAAAATCGAACCACATGGTGGATCCGAGTTTGGTGGATATCCTTCCTTAAAGCAGAGAAATGAGTCTTTTGATATAAAAGAGTCAATGAAAGTGCATTGTGGATTTGTCAAAGGAAACAAACCAGGTAACCACACTGGATTTGACATTGATGAAGATGACCTTATGGAGTTGGAGAAATTTCTTGATGTCATTGTTGCGTCAGCCATATTTGGTAACTATGACATTATACAGCAACCAAAGAACATCCATGCTGTGTCGAGAAAAAGCATTCCTTTCTTTTTATTTATTGATGAAGAAACAGAAGTTCCAAAGCTTCTGTTGCATAGACTTTGCCCAAATGTTCGTTATTCTATATGGGTAGATGGGAAGCTTGAGCTTGTTAAAGATCCTTATCAAATTCTTGAGAGGTACACGATGCTTTATAGTGGACGTGAAAATGCCACTTTTGCAATCTCAAGGCACTACAAGCGCTTTGATGTATTTAAGGAGGCCAAAGCTAACAAAGCAGCTGGAAAATACGACAATTCCTCCATGGATGAGCAAATTGGATTTTACGTCAAGGAGGGTTTAACACCTTATTCCGCAGCAAAGCTTCCAATAACGAGTGATGTTCCGGAAGGTTGTGTGATAATTAGGGAGCACATTCCGATAACAAATCTTTTCGGCTGTCTATGGTTCAATGAAGTCGATCGCTTTACTTCTAGGGACCAACTAAGCTTTTCGACAGCTTACCATAGGGATTTACTTGAGCAAATGCCACCTCCAAGGGTTTTAATTCGTCATCGTCCGCCGACAATGCCTAGGGGCGATGTTTCTTCAAAGACTCCATTAAAGAAGAATGTCACCAAGCGCGGAAGAGGAGATAGAAAGTCTGTCACAAGGGACGGAGGAGATTTGATCTGGGCTCTTGTTTCATGA 1494 41.77 MPLLARKPSETHFASSREKERLLPFIRRYICRRRVAMLLLAALALLIFISGSLTVNKGFSNVNERIGNIKLNERGTSRDLGFSVFPRMEDRGRRRSSRAERATNQDQTRTQHRHHPRLPVSRLHKSFTTNTDLTHFPLLPHPCDKFAQDLDQDVTCPVCYVTVGQAIARMPSFFSASPVLHSLTYVHDENPIKIEPHGGSEFGGYPSLKQRNESFDIKESMKVHCGFVKGNKPGNHTGFDIDEDDLMELEKFLDVIVASAIFGNYDIIQQPKNIHAVSRKSIPFFLFIDEETEVPKLLLHRLCPNVRYSIWVDGKLELVKDPYQILERYTMLYSGRENATFAISRHYKRFDVFKEAKANKAAGKYDNSSMDEQIGFYVKEGLTPYSAAKLPITSDVPEGCVIIREHIPITNLFGCLWFNEVDRFTSRDQLSFSTAYHRDLLEQMPPPRVLIRHRPPTMPRGDVSSKTPLKKNVTKRGRGDRKSVTRDGGDLIWALVS 497
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56172633 56177127 - Bda021921.1 Bda05g00771 7083

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00771 497 MobiDBLite consensus disorder prediction 449 483 - -
Bda05g00771 497 PANTHER DUF616 FAMILY PROTEIN 4 293 - -
Bda05g00771 497 MobiDBLite consensus disorder prediction 89 113 - -
Bda05g00771 497 PANTHER ALKALINE CERAMIDASE-RELATED 4 293 IPR006852 -
Bda05g00771 497 Pfam Protein of unknown function (DUF616) 293 438 IPR006852 -
Bda05g00771 497 Pfam Protein of unknown function (DUF616) 183 293 IPR006852 -
Bda05g00771 497 PANTHER DUF616 FAMILY PROTEIN 294 434 - -
Bda05g00771 497 PANTHER ALKALINE CERAMIDASE-RELATED 294 434 IPR006852 -
Bda05g00771 497 MobiDBLite consensus disorder prediction 89 117 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00771 - - - jre:108992766 506.523
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00771 Bda-Chr5:56172633 Bda07g00993 Bda-Chr7:11736289 2.16E-136 dispersed
Bda12g00842 Bda-Chr12:38063957 Bda05g00771 Bda-Chr5:56172633 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g223 . . . . . . Bma10g00499 Bma13g00955 . . . Cma09g00866 . Car09g00779 . Cpe06g00689 . Bhi09g03417 . . . . . . Cla11g01763 . Cec11g1850 Cco11g1857 Clacu11g1990 Cmu11g1799 . Cone6ag0145 Cone9ag0170 Cone14ag1064 . Lsi04g01334 Csa04g02345 Chy07g00077 . . . Bda05g00771 . . Bpe03g00837 . . . . Cmo09g00855 . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003322 2 11 1 2 2 0 1 1 0 1 1 1 1 1 1 1 0 3 1 1 1 1 1 1 1 0 1 6 2 1 47