Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00781 CAGGCAAGAAAAGTTTTTAAATTTTCCAAAGGGGCAGAGAGATTTCACGGGATACTTCGAGACGACATGTCGAGAAAGCAAGCATTGGATGCATTAAGATGCATACATTCATGGAGCAGGATGCAGAATGAAGTTAGAACTCGTCGACAATGCATGGTCACCGACTATACGACTCAACGAAAGAAACTGGAAAACCAGTTAAAACTCGATGCTAAGCTTCATGAACTTGAGGTGGAGTGGTGTGGTGGGTCTGAAACAATGGAGGAAATTCTTTCTAGGATTCACTATAGAGAAGAAGCAGCAGCTAGACGAGAGAGAGCCATGGCTTATGCATTCTCTCATCAGTGGAGAGCAAACTCAATATTGCATGTGAGCCAAGCATGTTACAACATAGACAAAGAAAACTGGGGATGGAGCTGGAAACAGAGGTGGATAGCTGCTAGGCCATGGGAGATCAAAGCTCATGCTCACCCCACCATTCCTAAGAAACTACAAACCAAAATCTACTCTAAATCTCCTCTCTCCATGGAAAACACTCTCTCAAACCCATTAAATTAG 558 43.37 QARKVFKFSKGAERFHGILRDDMSRKQALDALRCIHSWSRMQNEVRTRRQCMVTDYTTQRKKLENQLKLDAKLHELEVEWCGGSETMEEILSRIHYREEAAARRERAMAYAFSHQWRANSILHVSQACYNIDKENWGWSWKQRWIAARPWEIKAHAHPTIPKKLQTKIYSKSPLSMENTLSNPLN 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56268286 56269094 + Bda021934.1 Bda05g00781 7093

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00781 185 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 1 182 - -
Bda05g00781 185 PANTHER IQ-DOMAIN 5-RELATED 1 182 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00781 - - - cmo:103492919 226.868
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00019 Bda-Chr2:1031801 Bda05g00781 Bda-Chr5:56268286 1.49E-48 dispersed
Bda05g00781 Bda-Chr5:56268286 Bda09g00275 Bda-Chr9:3420580 4.27E-33 dispersed
Bda05g00781 Bda-Chr5:56268286 Bda05g01241 Bda-Chr5:60300088 3.07E-24 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g140 . . . . . . Bma10g00484 . Cmo16g00447 . . . . . . . . . . . . . . . . . . . . . . . . Cone14ag1038 Cone15ag1024 . . . . Blo07g00960 . Bda05g00781 . . Bpe03g00849 . . . . . . Cma16g00415 . Car16g00380 Cpe14g00349 . . . . . . . . Cla07g00945 Cam07g1020 Cec07g1090 Cco07g1069 Clacu07g0989 Cmu07g0985 Cre07g1360 . . Chy07g00958 Cme07g01328
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00176 . 1 458 IQD Protein Family AT3G52290 53.3 6.3e-95 344.7
Bda10g00517 . 6 248 IQD Protein Family AT3G52290 59.7 2.2e-55 213.4
Bda09g00275 . 1 418 IQD Protein Family AT3G22190 55.1 3.6e-95 345.5
Bda01g00627 . 1 395 IQD Protein Family AT2G26180 53.0 1.1e-91 334.0
Bda02g00019 . 1 274 IQD Protein Family AT2G33990 51.1 2.4e-60 229.2
Bda05g00781 . 2 162 IQD Protein Family AT2G33990 50.9 2.7e-40 162.5
Bda05g00781 . 1 173 IQD Protein Family AT3G15050 56.1 3.2e-49 192.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011558 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 0 30
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00781 Bda_Chr05 FPKM 37.630939 40.582756 44.092506 44.63155 68.252617 76.252213 70.764252 59.640491 61.775318