Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00809 ATGAAGATTCAATGCAACGTCTGCGAGGCGGCGGAGGCGCAGGTTCTGTGTTGCGCCGACGAGGCGGCGCTATGCTGGGCTTGCGACATGAAGGTTCACGCTGCCAACAAACTGGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCTTCCCAAATACCCAAATGTGACATTTGCCAGGAGATGGGTGGCTACATCTTCTGTTTGGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTCGCCATCCACACGGCGAATACTTACGTGTCGGCTCATCAGAGGTTTCTTCTCACTGGTGTCAAAGTCGGTCTTGAACCCGCCGGACCTCCTGCTTCCTCTTCCGAATCAAACCCCCATACGGGAGAGAAAATGTTCGAACTGAAGTCTGGCTCGGGGCCCCCGAGGCGCTTCTCAACGCCGTCAGTCGGTGAATTCGGTCAACAGTTGCCTGTAAGCTCTCGTGGGGTTGGGGACTATGCCCAAACTAAGGTCACTGCGCATAATGGAGGATTCGTATCGGGTTGGCTTCCTCAGTGGCCATTAGACGAGTTAATGGGGATGACAGGATTGGGTCAAAACTATGGCTCTGGCTCTATGGACAATGATTCATCAAAGGCTGATAGCGGTAAGCTCGGGGATTCTGATTCGTCCATTCTAAGAACAGGCGTGGAAGATCTTGATGACGACGAGTGCTTGGGTCAGGTACCGGATGCTTCATGGGCAGTTCCTCACAACCCGTCCCCGCCTACGGCCTCAGGACTGTATTGGCCGAGTAATTACAGCAGTTGTTTGGATAGCTCGGTCTATGTTCCCGACATATACAGCTCACCCGAGCAAAAGCCCCACCATTATCGACGACATGGTATGGAATCCAAACGTAGAAGACAATTCTAG 900 52.67 MKIQCNVCEAAEAQVLCCADEAALCWACDMKVHAANKLASKHQRVPLSGSSSQIPKCDICQEMGGYIFCLEDRALLCRKCDVAIHTANTYVSAHQRFLLTGVKVGLEPAGPPASSSESNPHTGEKMFELKSGSGPPRRFSTPSVGEFGQQLPVSSRGVGDYAQTKVTAHNGGFVSGWLPQWPLDELMGMTGLGQNYGSGSMDNDSSKADSGKLGDSDSSILRTGVEDLDDDECLGQVPDASWAVPHNPSPPTASGLYWPSNYSSCLDSSVYVPDIYSSPEQKPHHYRRHGMESKRRRQF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56536770 56538391 + Bda021966.1 Bda05g00809 7121

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00809 299 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bda05g00809 299 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda05g00809 299 MobiDBLite consensus disorder prediction 276 299 - -
Bda05g00809 299 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda05g00809 299 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bda05g00809 299 CDD Bbox1_BBX-like 5 47 - -
Bda05g00809 299 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 298 - -
Bda05g00809 299 MobiDBLite consensus disorder prediction 194 217 - -
Bda05g00809 299 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 298 - -
Bda05g00809 299 Gene3D Classic Zinc Finger 1 93 - -
Bda05g00809 299 MobiDBLite consensus disorder prediction 108 150 - -
Bda05g00809 299 MobiDBLite consensus disorder prediction 194 219 - -
Bda05g00809 299 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
Bda05g00809 299 CDD Bbox1_BBX-like 56 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00809 - - - jre:109011878 381.719
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00975 Bda-Chr3:8813827 Bda05g00809 Bda-Chr5:56536770 3.89E-45 dispersed
Bda05g00809 Bda-Chr5:56536770 Bda08g01236 Bda-Chr8:50639497 3.00E-37 dispersed
Bda05g00809 Bda-Chr5:56536770 Bda14g00574 Bda-Chr14:4384124 4.78E-40 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g00199 . 1 380 Orphan Transcription Factor Family AT5G61850 66.7 1.7e-124 443.0
Bda15g00277 . 1 379 Orphan Transcription Factor Family AT5G61850 64.1 1.4e-123 439.9
Bda03g00975 . 1 161 Orphan Transcription Factor Family AT1G06040 66.7 5.3e-56 214.2
Bda05g00809 . 1 106 Orphan Transcription Factor Family AT1G06040 66.0 2.5e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005660 1 1 3 2 2 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 2 1 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15911 PF00643 zf-B_box 1.70E-05 No_clan Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g00809 Bda_Chr05 FPKM 0.0 0.0 1.037487 2.11733 15.782675 12.835948 16.686203 20.579433 19.930944