Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00809 ATGAAGATTCAATGCAACGTCTGCGAGGCGGCGGAGGCGCAGGTTCTGTGTTGCGCCGACGAGGCGGCGCTATGCTGGGCTTGCGACATGAAGGTTCACGCTGCCAACAAACTGGCTAGCAAGCACCAGAGAGTTCCTCTCTCTGGCTCTTCTTCCCAAATACCCAAATGTGACATTTGCCAGGAGATGGGTGGCTACATCTTCTGTTTGGAGGATCGAGCTTTACTTTGCCGAAAATGCGATGTCGCCATCCACACGGCGAATACTTACGTGTCGGCTCATCAGAGGTTTCTTCTCACTGGTGTCAAAGTCGGTCTTGAACCCGCCGGACCTCCTGCTTCCTCTTCCGAATCAAACCCCCATACGGGAGAGAAAATGTTCGAACTGAAGTCTGGCTCGGGGCCCCCGAGGCGCTTCTCAACGCCGTCAGTCGGTGAATTCGGTCAACAGTTGCCTGTAAGCTCTCGTGGGGTTGGGGACTATGCCCAAACTAAGGTCACTGCGCATAATGGAGGATTCGTATCGGGTTGGCTTCCTCAGTGGCCATTAGACGAGTTAATGGGGATGACAGGATTGGGTCAAAACTATGGCTCTGGCTCTATGGACAATGATTCATCAAAGGCTGATAGCGGTAAGCTCGGGGATTCTGATTCGTCCATTCTAAGAACAGGCGTGGAAGATCTTGATGACGACGAGTGCTTGGGTCAGGTACCGGATGCTTCATGGGCAGTTCCTCACAACCCGTCCCCGCCTACGGCCTCAGGACTGTATTGGCCGAGTAATTACAGCAGTTGTTTGGATAGCTCGGTCTATGTTCCCGACATATACAGCTCACCCGAGCAAAAGCCCCACCATTATCGACGACATGGTATGGAATCCAAACGTAGAAGACAATTCTAG 900 52.67 MKIQCNVCEAAEAQVLCCADEAALCWACDMKVHAANKLASKHQRVPLSGSSSQIPKCDICQEMGGYIFCLEDRALLCRKCDVAIHTANTYVSAHQRFLLTGVKVGLEPAGPPASSSESNPHTGEKMFELKSGSGPPRRFSTPSVGEFGQQLPVSSRGVGDYAQTKVTAHNGGFVSGWLPQWPLDELMGMTGLGQNYGSGSMDNDSSKADSGKLGDSDSSILRTGVEDLDDDECLGQVPDASWAVPHNPSPPTASGLYWPSNYSSCLDSSVYVPDIYSSPEQKPHHYRRHGMESKRRRQF 299
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56536770 56538391 + Bda021966.1 Bda05g00809 7121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00809 299 SMART bboxneu5 52 99 IPR000315 GO:0008270
Bda05g00809 299 SMART bboxneu5 4 47 IPR000315 GO:0008270
Bda05g00809 299 MobiDBLite consensus disorder prediction 276 299 - -
Bda05g00809 299 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Bda05g00809 299 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Bda05g00809 299 CDD Bbox1_BBX-like 5 47 - -
Bda05g00809 299 PANTHER B-BOX ZINC FINGER PROTEIN 18 1 298 - -
Bda05g00809 299 MobiDBLite consensus disorder prediction 194 217 - -
Bda05g00809 299 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 298 - -
Bda05g00809 299 Gene3D Classic Zinc Finger 1 93 - -
Bda05g00809 299 MobiDBLite consensus disorder prediction 108 150 - -
Bda05g00809 299 MobiDBLite consensus disorder prediction 194 219 - -
Bda05g00809 299 Pfam B-box zinc finger 54 94 IPR000315 GO:0008270
Bda05g00809 299 CDD Bbox1_BBX-like 56 99 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00975 Bda-Chr3:8813827 Bda05g00809 Bda-Chr5:56536770 3.89E-45 dispersed
Bda05g00809 Bda-Chr5:56536770 Bda08g01236 Bda-Chr8:50639497 3.00E-37 dispersed
Bda05g00809 Bda-Chr5:56536770 Bda14g00574 Bda-Chr14:4384124 4.78E-40 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15911 PF00643 zf-B_box 1.70E-05 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00809 - - jre:109011878 381.719