Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00815 ATGGCTGCTGTTACTGATGTGCGGGGTGAGGAAGTGGGTTTGAGGAATTTGGGCTCGAAATCGAAACCTGTTTCGGAATTCGACATGGAAAAGCTTGTTGATTTGTTTAGCAAATTGAATCCTTCGGCAAAGGAATTTTTCCCCTCGTATACTCATCTTGATCATAACCATCACGGCTATTTTTATCATCAAAATGATCAGCAATTTTTGGATAACTATTTTACATTTGCGGAGAACAGCTGGGCCGACGATAGCCCGAACAATCGGAGGAGAAGAAATAACTCTAACCAGGGAAGGAGAAGACTAAATGGGAGAAGTTTAAGGGCTCAACGAGAAGATAGTGTTAGACGAACTGTTTATGTTTCTGACATTGATCAGCAGGTAACAGAAGAACGACTTGCTGCCTTATTCAGCAATTGCGGCCAAGTAATTGACTGCCGGATTTGTGGTGATCCTCATTCTGTTCTTCGTTTTGCCTTTGTGGAATTTTCTGATGAGTATGGTGCTAGAGCAGCTTTAAATCTTGGTGGGACAATGCTGGGCTACTACCCAGTCCGGGTATTGCCTTCAAAAACTGCCATCCTTCCTGTGAATCCTTCATTTCTCCCTAGGTCAGATGATGAACGGGAAATGTGTAGCAGAACAATCTATTGTACAAATATAGACAAAAAGGTATCTCAGGCGGAAGTTAAGAATTTTTTTGAAGCGGCATGTGGTGAGGTTGCTCGATTGAGGCTGCTAGGTGATCAGGCGCATTCCACTCGTATAGCTTTCGTGGAATTTACAATGGCTGAAAGCGCTATTCTCGCACTCAACTGTAGTGGGCTGGTGTTAGGATCGCAACCGATTCGAGTAAGTCCGTCGAAGACCCCTGTGAGGCCACGCATTTCTCGTCCGGCATTAACTGTTAGATCATAG 918 44.23 MAAVTDVRGEEVGLRNLGSKSKPVSEFDMEKLVDLFSKLNPSAKEFFPSYTHLDHNHHGYFYHQNDQQFLDNYFTFAENSWADDSPNNRRRRNNSNQGRRRLNGRSLRAQREDSVRRTVYVSDIDQQVTEERLAALFSNCGQVIDCRICGDPHSVLRFAFVEFSDEYGARAALNLGGTMLGYYPVRVLPSKTAILPVNPSFLPRSDDEREMCSRTIYCTNIDKKVSQAEVKNFFEAACGEVARLRLLGDQAHSTRIAFVEFTMAESAILALNCSGLVLGSQPIRVSPSKTPVRPRISRPALTVRS 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56631553 56636186 + Bda021972.1 Bda05g00815 7127

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00815 305 MobiDBLite consensus disorder prediction 84 110 - -
Bda05g00815 305 Pfam Ataxin-2 C-terminal region 35 50 IPR009818 -
Bda05g00815 305 SMART rrm1_1 215 286 IPR000504 GO:0003723
Bda05g00815 305 SMART rrm1_1 118 188 IPR000504 GO:0003723
Bda05g00815 305 CDD RRM1_CID8_like 115 194 IPR034823 -
Bda05g00815 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 117 192 IPR000504 GO:0003723
Bda05g00815 305 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 290 IPR000504 GO:0003723
Bda05g00815 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 181 IPR000504 GO:0003723
Bda05g00815 305 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 283 IPR000504 GO:0003723
Bda05g00815 305 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 300 - -
Bda05g00815 305 SUPERFAMILY RNA-binding domain, RBD 203 297 IPR035979 GO:0003676
Bda05g00815 305 Gene3D - 201 295 IPR012677 -
Bda05g00815 305 Gene3D - 75 193 IPR012677 -
Bda05g00815 305 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 300 - -
Bda05g00815 305 CDD RRM2_CID8_like 210 291 IPR034825 -
Bda05g00815 305 SUPERFAMILY RNA-binding domain, RBD 73 190 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00815 - - - jre:108994422 420.239
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda05g00815 Bda12g00790 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00815 Bda-Chr5:56631553 Bda07g01957 Bda-Chr7:36952438 3.53E-131 dispersed
Bda12g00790 Bda-Chr12:36876520 Bda05g00815 Bda-Chr5:56631553 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g910 . . . . . . . Bma13g00905 Cmo16g00493 Cmo04g00693 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g00770 Blo07g00996 . Bda05g00815 Bda12g00790 . . . . . . . Cma04g00645 Cma16g00458 Car04g00600 Car16g00416 Cpe14g00386 Cpe01g00582 . . . . . . . Cla07g01001 Cam07g1077 Cec07g1149 Cco07g1127 Clacu07g1051 Cmu07g1042 Cre07g1417 . . Chy07g01020 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004204 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 2 43