Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00836 ATGGGGCCGGGGGTGGCATTGTCCAGCGCAGAAAAGCAGGCGGAACGACTGAGAAAGGATGGCAACAATTGCTTCACAAAGGGTCGTCTTGGCGCTGCCATCGATGCCTATACGGAGGCAATCACGTTATGCCCTACTGTTCCTGTTTATTGGACAAACAGAGCCGTGTGCCATCGCAAGCGGAATGACTGGACGAAGGTGGAGGAGGATTGTAGGAGAGCAATTCAGCTAGATAACAGTTCCGTCAAGGCCCATTATATACTGGGACTAGCATTATTAAAGAAAGAAGAATATCCCGAAGGAATCAAGCAGTTAGAGAAGGCTTTGGAGCTCGGTAGAGGTGGAAACCGGAAGAGCTACATGGTAGAAGACATTTGGAAAGAACTTGCTAAAGCAAAGTATACAGAGTGGGAACTAGCATCCACCTCGAGATCATGGGAATTGCAAAGCTTGAAGGAGAGGTGTGAGACGGCCCTTACGCAAATGCATTTCTTAGAAAATTCTGAGACCGAAGGGTCCTTGGACGAAGCTTCTTTTTCCCATAGAAAACAATTAGAGGCTTTACAGGCTGTATTTAGGAAAGCTTCGGAGGGCGATATTCCCACTGAGGTGCCGGATTATTTATGTTGTAAAATAACGCTCGATATTCTCCGCGATCCCGTCATTACTCCTAGCGGTGTTACATACGAGAGGGCAGTTATTATCGACCATATTCAAAAGGTGGGGAAGTTCGATCCGGTCACGAGGGAAGTACTTCACGAATCACAGCTCGTGCCGAACTTAGGTATTAAAGAAGCTGTGCAGGCTTTCCTAGATAAGCATGGATGGGCATATCAGACAGATTGA 846 47.16 MGPGVALSSAEKQAERLRKDGNNCFTKGRLGAAIDAYTEAITLCPTVPVYWTNRAVCHRKRNDWTKVEEDCRRAIQLDNSSVKAHYILGLALLKKEEYPEGIKQLEKALELGRGGNRKSYMVEDIWKELAKAKYTEWELASTSRSWELQSLKERCETALTQMHFLENSETEGSLDEASFSHRKQLEALQAVFRKASEGDIPTEVPDYLCCKITLDILRDPVITPSGVTYERAVIIDHIQKVGKFDPVTREVLHESQLVPNLGIKEAVQAFLDKHGWAYQTD 281
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56921583 56925585 + Bda021997.1 Bda05g00836 7148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00836 281 PANTHER OS08G0113300 PROTEIN 7 280 - -
Bda05g00836 281 PANTHER E3 UBIQUITIN-PROTEIN LIGASE CHIP 7 280 IPR045200 GO:0000209|GO:0061630
Bda05g00836 281 Gene3D Tetratricopeptide repeat domain 7 144 IPR011990 GO:0005515
Bda05g00836 281 SUPERFAMILY TPR-like 6 111 IPR011990 GO:0005515
Bda05g00836 281 ProSiteProfiles U-box domain profile. 203 277 IPR003613 GO:0004842|GO:0016567
Bda05g00836 281 Pfam U-box domain 204 276 IPR003613 GO:0004842|GO:0016567
Bda05g00836 281 SUPERFAMILY RING/U-box 195 278 - -
Bda05g00836 281 CDD RING-Ubox_CHIP 204 270 IPR045202 -
Bda05g00836 281 Coils Coil 148 168 - -
Bda05g00836 281 SMART tpr_5 82 115 IPR019734 GO:0005515
Bda05g00836 281 SMART tpr_5 14 47 IPR019734 GO:0005515
Bda05g00836 281 SMART tpr_5 48 81 IPR019734 GO:0005515
Bda05g00836 281 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 202 280 IPR013083 -
Bda05g00836 281 ProSiteProfiles TPR repeat profile. 82 115 IPR019734 GO:0005515
Bda05g00836 281 SMART Ubox_2 207 270 IPR003613 GO:0004842|GO:0016567
Bda05g00836 281 Pfam Anaphase-promoting complex, cyclosome, subunit 3 49 108 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00836 Bda-Chr5:56921583 Bda12g00756 Bda-Chr12:35686484 5.98E-164 dispersed
Bda05g00836 Bda-Chr5:56921583 Bda05g01129 Bda-Chr5:59508493 4.49E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00836 K09561 - csv:101215457 451.825