Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00845 CCCCCTCCCATGGCGTCCGGCGCTGGCTCTCCTTGCGGGGCCTGCAAGTTTCTGAGGCGAAAGTGCGCGGCTGATTGTATATTTGCGCCGTACTTTTGCTCGGAACAAGGGCCTGCTCGATTCGCTGCGATCCATAAAGTGTTTGGAGCGAGCAATGTTGCGAAGCTTTTGTTGCATGTTCCTGTTCCTGATCGGTCTGAGGCTGTTGTTACTATTTCATATGAAGCTCAAGCTAGAATTAGAGATCCTGTTTATGGCTGTGTTTCTCATATCTTTGCCTTGCAACAGCAGGTTTCTTCTTCAGTTCTTCTTCTTCTTCTACACCTAGTTTTTCATCTCTTTCTATTCCTTATCTTGAAGTAG 363 47.38 PPPMASGAGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVAKLLLHVPVPDRSEAVVTISYEAQARIRDPVYGCVSHIFALQQQVSSSVLLLLLHLVFHLFLFLILK 120
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 56998318 56998680 + Bda022007.1 Bda05g00845 7157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00845 120 ProSiteProfiles LOB domain profile. 10 113 IPR004883 -
Bda05g00845 120 PANTHER LOB DOMAIN CONTAINING PROTEIN 5 100 - -
Bda05g00845 120 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 5 100 - -
Bda05g00845 120 Pfam Lateral organ boundaries (LOB) domain 11 100 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00845 Bda-Chr5:56998318 Bda10g00531 Bda-Chr10:39045475 3.22E-50 dispersed
Bda05g00845 Bda-Chr5:56998318 Bda03g00898 Bda-Chr3:7849120 1.55E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15918 PF03195 LOB 5.30E-36 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00845 K13944 - sind:105165639 181.8