Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00850 ATGGATTTCGAATTCTCACCTGAATTCCCGTTTGGCTTGCCGGAATCGTTTTCCTGGAAAGAGCTTTTCGACCACCAGACCTCTCTCCCGTTCAACTTCAACGACTCGGAGGAAATGCTACTGTTCGAAGCAGTTGCAGAGGGAATAAATCTGGAAGTTTCAGAGAGCAGCTCTTTCGGAGCGGTTAAGGAAGAAGGAGTGAGCTCCTGCAATAATAACCAAAAGCAGCCATTGAAGGAGAAGTCATACAGAGGGGTGAGAAGGCGGCCATGGGGAAAGTACGCAGCAGAAATCAGGGATTCCACCAGGCATGGGATAAGGGTCTGGCTGGGGACTTTCGACAGTGCAGAGGCCGCCGCTCTGGCCTACGATCAAGCTGCATTTTCGATGAGAGGGTCAATGGCAGTTCTTAATTTTCCGGCGGAAGTGGTTCGACAGTCTCTTCAGGAAATCAAGTATGGATTCGAAGAAGGGTGTTCCCCTGTTATTGCCCTCAAGAGAAACCACTCCATGAGAAGAAAGGCGTTTTCAAACAAAAGTAAAGGAGTAGAGAAGAGGAAGAAGAAAGTAGTGGTTTTGGAGGATTTGGGGGCGGATTATTTGGACCAACTTTTGAGTTTAAGCTCTTCTTAA 633 47.87 MDFEFSPEFPFGLPESFSWKELFDHQTSLPFNFNDSEEMLLFEAVAEGINLEVSESSSFGAVKEEGVSSCNNNQKQPLKEKSYRGVRRRPWGKYAAEIRDSTRHGIRVWLGTFDSAEAAALAYDQAAFSMRGSMAVLNFPAEVVRQSLQEIKYGFEEGCSPVIALKRNHSMRRKAFSNKSKGVEKRKKKVVVLEDLGADYLDQLLSLSSS 210
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57029235 57029867 + Bda022013.1 Bda05g00850 7162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00850 210 CDD AP2 81 141 IPR001471 GO:0003700|GO:0006355
Bda05g00850 210 PRINTS Ethylene responsive element binding protein signature 106 122 IPR001471 GO:0003700|GO:0006355
Bda05g00850 210 PRINTS Ethylene responsive element binding protein signature 83 94 IPR001471 GO:0003700|GO:0006355
Bda05g00850 210 Gene3D AP2/ERF domain 81 142 IPR036955 GO:0003700|GO:0006355
Bda05g00850 210 SMART rav1_2 82 146 IPR001471 GO:0003700|GO:0006355
Bda05g00850 210 PANTHER DNA-BINDING DOMAIN 21 207 IPR044808 GO:0003700|GO:0009873
Bda05g00850 210 ProSiteProfiles AP2/ERF domain profile. 82 140 IPR001471 GO:0003700|GO:0006355
Bda05g00850 210 Pfam AP2 domain 82 132 IPR001471 GO:0003700|GO:0006355
Bda05g00850 210 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 21 207 - -
Bda05g00850 210 SUPERFAMILY DNA-binding domain 82 142 IPR016177 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00850 Bda-Chr5:57029235 Bda07g01182 Bda-Chr7:14229198 2.39E-53 dispersed
Bda10g00555 Bda-Chr10:39523675 Bda05g00850 Bda-Chr5:57029235 6.31E-30 transposed
Bda13g00069 Bda-Chr13:938904 Bda05g00850 Bda-Chr5:57029235 7.94E-56 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15919 PF00847 AP2 7.80E-15 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00850 K14516 - pop:7454341 253.832