Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00875 CCCACTATCATGGCTTGCAGTGTCGCAGACCTCCACTCCCTCTTGGGTGGCGCCGCCAACGCCACTGCCGCTGCCGACTACATTTGCGCGCAGTTTCAAGCAGTGTCCAACAAGTTTGTAGACACGAACTATGCTGTTGATAACACCTACCTCCTCTTCTCTGCTTACCTTGTTTTCGCCATGCAGCTCGGCTTTGCAATGCTGTGCGCAGGCTCCGTCAGAGCGAAGAACACCATGAACATTATGCTTACCAATGTACTCGACGCCGCAACTGGCGGTATTTTCTACTACCTGTTTGGATTTGCGTTGGCTTTCGGCACTCCATCGAATGGATTCATTGGGCAGCACTTTTTTGGGCTGAGTCAGTTTCCTTCTCCGTCATATGACTATGGCTTCTGTCTATTCCAGTGGGCTTTCGCCATTGCAGCTGCTGGGATCACCAGCGGTTCGATCGCAGAGAGAACACAGTTTGTTTCTTATTTGATCTATTCGTCTTTCTTGACCGGTCTGGTTTACCCAATTGTTGCTCACTGGTTCTGGTCTGCCGATGGATGGGGAAGCGCTGCTAAAGCTGATAACCTCTTGTTTGGTTCTGGGGTTATTGATTTTGCTGGCTCAGGCGTTGTTCACTTGGTCGGTGGCATTGCCGGCTTGTGGGGAGCCTTCATCGAGGGCCCGCGTATAGGTCGGTTTGACCACGGCGGAAAACCCGTGGCTCTACGTGGCCACAGTGGCACGCTCGTCGTCCTCGGAACATTTCTTCTCTGGTTCGGTTGGTACGGTTTCAATCCAGGCTCATTCCTTAACATCTTGAAGGCTTATGGAGAAAGTGGTTCATATTATGGGCAGTGGAGCGCAGTTGGGAGAACCGCAGTGACGACTACCCTAGCCGGCTGCTCCGCCGCCCTCACCACTCTCTTCGGTAAACGGTTGATCTCAGGCCACTGGAACGTAACCGACGTTTGCAATGGCTTGCTCGGCGGATTTGCAGCCGTGACCGGTGGGTGCGCAGTGGTCGACCCGTGGGCTGCAATCCTATGCGGTTTTGTGGCAGCTTGGGTGCTGATTGCATTCAACAAGCTGGCCGAGAAGCTCCAGTACGACGACCCGCTCGAAGCAGCTCAGCTCCACGGAGGGTGTGGAGCGTGGGGAATCATCTTCACTGGATTGTTTGCCAAAAAAGAGTACGTCAATGAGATCTTTCCAGGTAACCCAAACAGACCATATGGGCTGTTCATGGGCGGCGGAGGAAGCCTACTGGCGGCGCATATCGTCCAGGTACTGGCGATCACCGGTTGGGTGAGCCTGACAATGGGGACGTTGTTCTGGGTCCTGCACAAACTGAAGCTTTTGAGAATTACAGCTGAGGAAGAACTGGCAGGAATGGATCTGACCAGCCATGGAGGTTTAGCGTATGAATATTATGATGAGAGTAAAACCGAGCTCGTCCTTCGCGGAGCTCCTTCAACTGTTTAG 1476 53.25 PTIMACSVADLHSLLGGAANATAAADYICAQFQAVSNKFVDTNYAVDNTYLLFSAYLVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYLFGFALAFGTPSNGFIGQHFFGLSQFPSPSYDYGFCLFQWAFAIAAAGITSGSIAERTQFVSYLIYSSFLTGLVYPIVAHWFWSADGWGSAAKADNLLFGSGVIDFAGSGVVHLVGGIAGLWGAFIEGPRIGRFDHGGKPVALRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKAYGESGSYYGQWSAVGRTAVTTTLAGCSAALTTLFGKRLISGHWNVTDVCNGLLGGFAAVTGGCAVVDPWAAILCGFVAAWVLIAFNKLAEKLQYDDPLEAAQLHGGCGAWGIIFTGLFAKKEYVNEIFPGNPNRPYGLFMGGGGSLLAAHIVQVLAITGWVSLTMGTLFWVLHKLKLLRITAEEELAGMDLTSHGGLAYEYYDESKTELVLRGAPSTV 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57197472 57198947 + Bda022036.1 Bda05g00875 7187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00875 491 PANTHER AMMONIUM TRANSPORTER 4 480 - -
Bda05g00875 491 ProSitePatterns Ammonium transporters signature. 202 227 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bda05g00875 491 PANTHER AMMONIUM TRANSPORTER 4 480 - -
Bda05g00875 491 Gene3D Ammonium transporter AmtB like domains 23 487 IPR029020 -
Bda05g00875 491 TIGRFAM amt: ammonium transporter 47 472 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda05g00875 491 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bda05g00875 491 SUPERFAMILY Ammonium transporter 44 453 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00875 Bda-Chr5:57197472 Bda09g01532 Bda-Chr9:46997618 5.70E-19 dispersed
Bda04g01290 Bda-Chr4:63411787 Bda05g00875 Bda-Chr5:57197472 3.39E-73 transposed
Bda07g01164 Bda-Chr7:13855341 Bda05g00875 Bda-Chr5:57197472 0 transposed
Bda12g00685 Bda-Chr12:33348517 Bda05g00875 Bda-Chr5:57197472 0 transposed
Bda13g00031 Bda-Chr13:504384 Bda05g00875 Bda-Chr5:57197472 2.14E-66 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00875 K03320 - jre:109020544 844.343