Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00882 ATGCGCCGAAAGCGCCTGGCCGACTGTGGAATTGGGTTCGGACGCAATGCCGTCGGCGGTCGAGATGGTCGATTCTACGTCGTCTCTGATCCCGGAGACGATGACCCTGTCAATCCAAGACCCGGCACCCTTCGCCACGCTGTCATTCAGGATCAACCACTGTGGATCGTCTTCAAGCGCGACATGGTGATCACTTTAAAGCAAGAGCTTATTATGAACAGCTTCAAGACGATTGATGCTCGAGGTGTAAACGTTCATATTGCTTATGGGGCTTGCATTACGATTCAATTCATTACCAACGTCATTATCCACGGCCTCCACATTCACGACTGCAAGCCGACTGGAAATGCGATGGTTAGAAGCTCGCCCAGCCACTACGGGTGGAGGACTATGGCCGATGGGGATGGCATTTCCATTTTTGGATCGAGTCATATTTGGATCGACCACAACTCTCTCTCCAATTGCGCCGATGGCCTAGTAGATGCCGTCATGGGTTCCACCGCCATTACCATCTCCAACAACTACTTCACTCATCACAATGAGGTAATTCTACTGGGTCACAGTGACTCTTACACGAGGGACAAGCAAATGCAAGTGACAATCGCCTACAATCATTTTGGAGAGGGTCTTATCCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTTGTAAACAATGACTACACCCACTGGGAAATGTACGCCATTGGCGGAAGTGCCGATCCCACGATCAACAGCCAGGGAAATAGATACTTAGCCCCTGTAAACCCTTTTGCAAAAGAGGTGACTAAGAGGGTTGTTACGAACTCATACGAGTGGAGACAGTGGAACTGGAGATCGGAAGGAGACCTGTTGCTAAACGGAGCCTACTTCACCCCTTCAGGAGCTGGTGCCGGAGCGAGTTATGCGAGAGCATCCAGCTTGGGAGCCAAGTCTTCCTCCTTGGTCGCCTCCATGACCTCCGGTGCAGGTGCTCTTTCTTGCCGCCGAGGTTACCAGTGCTAA 1008 51.09 MRRKRLADCGIGFGRNAVGGRDGRFYVVSDPGDDDPVNPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVVTNSYEWRQWNWRSEGDLLLNGAYFTPSGAGAGASYARASSLGAKSSSLVASMTSGAGALSCRRGYQC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57283467 57284707 - Bda022044.2 Bda05g00882 7194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00882 335 SUPERFAMILY Pectin lyase-like 7 335 IPR011050 -
Bda05g00882 335 SMART amb_all 61 258 IPR002022 -
Bda05g00882 335 PANTHER PECTATE LYASE 18-RELATED 2 332 IPR045032 GO:0030570
Bda05g00882 335 Pfam Pectate lyase 87 250 IPR002022 -
Bda05g00882 335 PANTHER PECTATE LYASE 2 332 - -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 9 26 IPR018082 -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 69 85 IPR018082 -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 235 254 IPR018082 -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 213 232 IPR018082 -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 306 329 IPR018082 -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 133 154 IPR018082 -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 33 58 IPR018082 -
Bda05g00882 335 PRINTS Pollen allergen Amb family signature 277 301 IPR018082 -
Bda05g00882 335 Gene3D - 1 328 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00882 Bda-Chr5:57283467 Bda14g00785 Bda-Chr14:6062290 0 dispersed
Bda05g00882 Bda-Chr5:57283467 Bda05g00883 Bda-Chr5:57295485 0 tandem
Bda12g00688 Bda-Chr12:33372667 Bda05g00882 Bda-Chr5:57283467 0 wgd
Bda13g00026 Bda-Chr13:467230 Bda05g00882 Bda-Chr5:57283467 0 wgd
Bda03g01113 Bda-Chr3:11543447 Bda05g00882 Bda-Chr5:57283467 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00882 K01728 - nnu:104587909 647.891