Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00883 ATGCGCCGAAAGCGCCTGGCCGACTGTGGAATTGGGTTCGGACGCAATGCCGTCGGCGGTCGAGATGGTCGATTCTACGTCGTCTCTGATCCCGGAGACGATGACCCTGTCCATCCAAGACCCGGCACCCTTCGCCACGCTGTCATTCAGGATCAACCACTGTGGATCGTCTTCAAGCGCGACATGGTGATCACTTTAAAGCAAGAGCTTATTATGAACAGCTTCAAGACGATTGATGCTCGAGGTGTAAACGTTCATATTGCTTATGGGGCTTGCATTACGATTCAATTCATCACCAACGTCATTATCCACGGCCTCCACATTCACGACTGCAAGCCGACCGGAAATGCGATGGTTAGAAGCTCGCCCAGCCACTACGGGTGGAGGACTATGGCCGATGGGGATGGCATTTCCATTTTTGGATCGAGTCATATTTGGATCGACCACAACTCTCTCTCCAATTGCGCCGATGGCCTAGTCGATGCCGTCATGGGTTCCACCGCCATTACCATCTCCAACAACTACTTCACTCATCACAATGAGGTAATTCTACTGGGTCACAGTGACTCTTACATAAGGGACAAGCAAATGCAAGTGACAATCGCCTACAATCATTTTGGAGAGGGTCTTATCCAGAGAATGCCAAGGTGTAGGCATGGATATTTTCATGTTGTAAACAATGACTACACCCACTGGGAAATGTATGCAATTGGCGGAAGTGCCGATCCCACGATCAACAGCCAGGGAAATAGATACTTAGCCCCTGTAAACCCTTTTGCAAAAGAGGTGACTAAGAGGGTTGTTACGAACTCATACGAGTGGAGACAGTGGAACTGGAGATCGGAAGGAGACCTGTTGCTAAACGGAGCCTACTTCACCCCTTCAGGAGCTGGTGCCGGAGCGAGTTATGCGAGAGCATCCAGCTTGGGAGCCAAGTCTTCCTCCTTGGTCGCCTCCATTACCTCCGGTGCAGGTGCTCTTTCTTGCCGCCCAGGTTACCAGTGCTAA 1008 50.99 MRRKRLADCGIGFGRNAVGGRDGRFYVVSDPGDDDPVHPRPGTLRHAVIQDQPLWIVFKRDMVITLKQELIMNSFKTIDARGVNVHIAYGACITIQFITNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDGISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNYFTHHNEVILLGHSDSYIRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSADPTINSQGNRYLAPVNPFAKEVTKRVVTNSYEWRQWNWRSEGDLLLNGAYFTPSGAGAGASYARASSLGAKSSSLVASITSGAGALSCRPGYQC 335
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57295485 57296726 - Bda022045.1 Bda05g00883 7195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00883 335 PANTHER PECTATE LYASE 2 332 - -
Bda05g00883 335 Gene3D - 1 328 IPR012334 -
Bda05g00883 335 PANTHER PECTATE LYASE 18-RELATED 2 332 IPR045032 GO:0030570
Bda05g00883 335 SMART amb_all 61 258 IPR002022 -
Bda05g00883 335 Pfam Pectate lyase 87 250 IPR002022 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 306 329 IPR018082 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 9 26 IPR018082 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 33 58 IPR018082 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 69 85 IPR018082 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 235 254 IPR018082 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 213 232 IPR018082 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 133 154 IPR018082 -
Bda05g00883 335 PRINTS Pollen allergen Amb family signature 277 301 IPR018082 -
Bda05g00883 335 SUPERFAMILY Pectin lyase-like 7 335 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01113 Bda-Chr3:11543447 Bda05g00883 Bda-Chr5:57295485 0 dispersed
Bda05g00883 Bda-Chr5:57295485 Bda12g00688 Bda-Chr12:33372667 0 dispersed
Bda05g00882 Bda-Chr5:57283467 Bda05g00883 Bda-Chr5:57295485 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00883 K01728 - csv:101207204 644.81