Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda05g00916 | ATGGAGGTTTTCTCAAACTATTTTGATTCTAATTATGAGTCTTCGGAAAGAAGTGATGTTAGCTGGACAGGAAGTGTTTCCGACGAGGAGGTTTTTCTGGCGGCGAGCTATCCCAAGAAGAGGGCTGGACGGAAGAAGTTTAAGGAGACTAGGCATCCAATTTACCGGGGAGTGAGGAGGAGGAATTCCGGCAAGTGGGTTTGTGAAGTAAGAGAGCCGAATAAGCAGGTGAGGATTTGGCTGGGGACTTTTACGACGGCTGAAATGGCTGCTCGCGCCCACGACGTGGCAGCCATTACCCTCCGAGGCCGAGGAGCTTGCCTGAATTTTGCTGACTCAGCGTGGCGACTTCCAGTGCCGGCGTCGGCAGATGCAAAGGATATTCAGAAAGTAGCGGCTGAAGCTGCAGAGGCTTTTCGTCCAACGGAGACCAACCCACTGCAGAGGGAGTCAACCCTGATAAGTCGGAGGTGGAAGCCACCGGGAGAATGCCGGAAAATGTGTTCTACATGGACGAGGAGGATGTTTTCGGGATGCCTGAGTTGTTGGTGA | 552 | 52.54 | MEVFSNYFDSNYESSERSDVSWTGSVSDEEVFLAASYPKKRAGRKKFKETRHPIYRGVRRRNSGKWVCEVREPNKQVRIWLGTFTTAEMAARAHDVAAITLRGRGACLNFADSAWRLPVPASADAKDIQKVAAEAAEAFRPTETNPLQRESTLISRRWKPPGECRKMCSTWTRRMFSGCLSCW | 183 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 57728101 | 57728652 | - | Bda022071.1 | Bda05g00916 | 7228 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda05g00916 | 183 | Pfam | AP2 domain | 53 | 103 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00916 | 183 | PANTHER | CBF/DREB1 TRANSCRIPTION FACTOR | 10 | 148 | - | - | |
Bda05g00916 | 183 | CDD | AP2 | 53 | 113 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00916 | 183 | SMART | rav1_2 | 54 | 117 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00916 | 183 | PRINTS | Ethylene responsive element binding protein signature | 77 | 93 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00916 | 183 | PRINTS | Ethylene responsive element binding protein signature | 55 | 66 | IPR001471 | GO:0003700|GO:0006355 | |
Bda05g00916 | 183 | SUPERFAMILY | DNA-binding domain | 54 | 113 | IPR016177 | GO:0003677 | |
Bda05g00916 | 183 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D | 10 | 148 | IPR045277 | GO:0003700 | |
Bda05g00916 | 183 | Gene3D | AP2/ERF domain | 54 | 112 | IPR036955 | GO:0003700|GO:0006355 | |
Bda05g00916 | 183 | ProSiteProfiles | AP2/ERF domain profile. | 54 | 111 | IPR001471 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda03g01398 | Bda-Chr3:50706438 | Bda05g00916 | Bda-Chr5:57728101 | 1.14E-61 | dispersed | |
Bda05g00916 | Bda-Chr5:57728101 | Bda15g00742 | Bda-Chr15:10900169 | 2.69E-81 | dispersed | |
Bda05g00916 | Bda-Chr5:57728101 | Bda06g00662 | Bda-Chr6:9261373 | 9.79E-98 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15924 | PF00847 | AP2 | 2.20E-13 | CL0081 | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda05g00916 | - | K09286 | minc:123197846 | 221.861 |