Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00916 ATGGAGGTTTTCTCAAACTATTTTGATTCTAATTATGAGTCTTCGGAAAGAAGTGATGTTAGCTGGACAGGAAGTGTTTCCGACGAGGAGGTTTTTCTGGCGGCGAGCTATCCCAAGAAGAGGGCTGGACGGAAGAAGTTTAAGGAGACTAGGCATCCAATTTACCGGGGAGTGAGGAGGAGGAATTCCGGCAAGTGGGTTTGTGAAGTAAGAGAGCCGAATAAGCAGGTGAGGATTTGGCTGGGGACTTTTACGACGGCTGAAATGGCTGCTCGCGCCCACGACGTGGCAGCCATTACCCTCCGAGGCCGAGGAGCTTGCCTGAATTTTGCTGACTCAGCGTGGCGACTTCCAGTGCCGGCGTCGGCAGATGCAAAGGATATTCAGAAAGTAGCGGCTGAAGCTGCAGAGGCTTTTCGTCCAACGGAGACCAACCCACTGCAGAGGGAGTCAACCCTGATAAGTCGGAGGTGGAAGCCACCGGGAGAATGCCGGAAAATGTGTTCTACATGGACGAGGAGGATGTTTTCGGGATGCCTGAGTTGTTGGTGA 552 52.54 MEVFSNYFDSNYESSERSDVSWTGSVSDEEVFLAASYPKKRAGRKKFKETRHPIYRGVRRRNSGKWVCEVREPNKQVRIWLGTFTTAEMAARAHDVAAITLRGRGACLNFADSAWRLPVPASADAKDIQKVAAEAAEAFRPTETNPLQRESTLISRRWKPPGECRKMCSTWTRRMFSGCLSCW 183
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57728101 57728652 - Bda022071.1 Bda05g00916 7228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00916 183 Pfam AP2 domain 53 103 IPR001471 GO:0003700|GO:0006355
Bda05g00916 183 PANTHER CBF/DREB1 TRANSCRIPTION FACTOR 10 148 - -
Bda05g00916 183 CDD AP2 53 113 IPR001471 GO:0003700|GO:0006355
Bda05g00916 183 SMART rav1_2 54 117 IPR001471 GO:0003700|GO:0006355
Bda05g00916 183 PRINTS Ethylene responsive element binding protein signature 77 93 IPR001471 GO:0003700|GO:0006355
Bda05g00916 183 PRINTS Ethylene responsive element binding protein signature 55 66 IPR001471 GO:0003700|GO:0006355
Bda05g00916 183 SUPERFAMILY DNA-binding domain 54 113 IPR016177 GO:0003677
Bda05g00916 183 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 10 148 IPR045277 GO:0003700
Bda05g00916 183 Gene3D AP2/ERF domain 54 112 IPR036955 GO:0003700|GO:0006355
Bda05g00916 183 ProSiteProfiles AP2/ERF domain profile. 54 111 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01398 Bda-Chr3:50706438 Bda05g00916 Bda-Chr5:57728101 1.14E-61 dispersed
Bda05g00916 Bda-Chr5:57728101 Bda15g00742 Bda-Chr15:10900169 2.69E-81 dispersed
Bda05g00916 Bda-Chr5:57728101 Bda06g00662 Bda-Chr6:9261373 9.79E-98 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15924 PF00847 AP2 2.20E-13 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00916 - K09286 minc:123197846 221.861