Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00918 ATGTCAACAACTCCAGATGCAACTCCAGATTGGCTCAACAATGGCGACAACGCGTGGCAATTGACGTCCGCTACGCTTGTCGGTCTGCAAAGTATGCCGGGTCTGGTGATTCTCTACGGCAGCATCGTGAAGAAGAAATGGGCGGTGAACTCGGCTTTCATGGCCCTCTACGCCTTCGCCGCCACCCTCATATGCTGGGTTCTGGTCGGCTACCGTATGGCCTTTGGGGACGAATTGCTTCCACTCTGGGGCAAAGGGGCTCCTTCTCTCGGCCAATACTACCTGACGAACCGAGCTCAAATCCCGGAGAGCACACACTATCGAGAAGATGGGTCGATTGAGTCTCCGAAGATCGAGCCCTTTTTTCCAATGGCGTCGCTAGTTTACTTCCAGTTTACATTTGCCGCAATTACGCTTATTTTACTGGGGGGGTCTGTTCTTGGGCGGATGAACATCAAAGCTTGGATGGCTTTTGTCCCTCTTTGGCTAATTTTCTCCTACACGGTCGGAGCCTACAGTTTATGGGGAGGAGGGTTTCTCTTTCACTGGGGCGTCATCGATTATTCCGGCGGCTATGTCATCCACCTCTCCTCCGGGATTGCCGGCTTCACCGCTGCTTATTGGGTTGGTCCGAGAATAAAGAGCGATAGGGAGAGATTTCCACCCAATAACGTCTTGCTCACGCTCGCCGGGGCTGGGCTGCTTTGGATGGGCTGGTCGGGGTTCAACGGCGGTGCGCCGCGGGCAGCGAATGTTGTGGCCTCAATTGCTGTGTTGAACACAAACATAAGTGCAGCGACGAGCCTTCTTGTGTGGACCACTCTGGACGTGGTTGTCTTCGGAAAACCATCGGTGATCGGAGCAGTTCAGGGCATGATCACCGGCCTCGCTTGCGTCACTCCGGGAGCAGGAGTAGTTCAACCATGGGCCGCCATAGTAATGGGAGTCCTCGCTGGCAGCATTCCATGGGTGTCTATGATGATTCTTCACAAAAAGTCCACTCTTCTACAAAAGGTGGACGACACTCTAGGAGTATTTTACACGCATGGAGTTGCAGGAATTTTAGGCGGTCTTCTAACAGGGCTCCTGGCAGAGCCATCGCTGTGCAGTCTCAGCCTCCCAGTGAGCAACACAAGAGGCGCATTTTATGGAGATGGTGGGGGCATGCTGTTTTTCAAACAATTGGTTGCGGCCATGTTTATTATAGGGTGGAACATAGTCTCCACCACAATCATTCTCTTGTTTATTAGACTTTTCATTCCGTTGAGAATGCCCGACGAGGAGCTGCTGGTCGGAGACGATGCGGCTCACGGGGAGGAGGCTTATGCTCTTTGGGGAGACGGAGAGAAATTCGACCCGAATAAACACGGGTGGAATATGGGTTCTCATGCAGAGGAATTGGCTCCCTCTCCCTATGTCCATGGTGCTAGAGGGGTAACCATTGTTCTGTAA 1452 52.82 MSTTPDATPDWLNNGDNAWQLTSATLVGLQSMPGLVILYGSIVKKKWAVNSAFMALYAFAATLICWVLVGYRMAFGDELLPLWGKGAPSLGQYYLTNRAQIPESTHYREDGSIESPKIEPFFPMASLVYFQFTFAAITLILLGGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSLWGGGFLFHWGVIDYSGGYVIHLSSGIAGFTAAYWVGPRIKSDRERFPPNNVLLTLAGAGLLWMGWSGFNGGAPRAANVVASIAVLNTNISAATSLLVWTTLDVVVFGKPSVIGAVQGMITGLACVTPGAGVVQPWAAIVMGVLAGSIPWVSMMILHKKSTLLQKVDDTLGVFYTHGVAGILGGLLTGLLAEPSLCSLSLPVSNTRGAFYGDGGGMLFFKQLVAAMFIIGWNIVSTTIILLFIRLFIPLRMPDEELLVGDDAAHGEEAYALWGDGEKFDPNKHGWNMGSHAEELAPSPYVHGARGVTIVL 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57768064 57769864 + Bda022074.1 Bda05g00918 7230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00918 483 Gene3D Ammonium transporter AmtB like domains 1 445 IPR029020 -
Bda05g00918 483 SUPERFAMILY Ammonium transporter 11 424 - -
Bda05g00918 483 Pfam Ammonium Transporter Family 18 442 IPR024041 GO:0008519|GO:0016020|GO:0072488
Bda05g00918 483 PANTHER AMMONIUM TRANSPORTER MEP2 7 480 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda05g00918 483 TIGRFAM amt: ammonium transporter 16 442 IPR001905 GO:0008519|GO:0016020|GO:0072488
Bda05g00918 483 ProSitePatterns Ammonium transporters signature. 187 212 IPR018047 GO:0008519|GO:0016020|GO:0072488
Bda05g00918 483 PRINTS Rhesus blood group protein signature 131 147 IPR002229 GO:0005887
Bda05g00918 483 PRINTS Rhesus blood group protein signature 257 279 IPR002229 GO:0005887
Bda05g00918 483 PRINTS Rhesus blood group protein signature 350 366 IPR002229 GO:0005887
Bda05g00918 483 PRINTS Rhesus blood group protein signature 226 244 IPR002229 GO:0005887
Bda05g00918 483 PRINTS Rhesus blood group protein signature 312 330 IPR002229 GO:0005887
Bda05g00918 483 PANTHER AMMONIUM TRANSPORTER 7 480 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00918 Bda-Chr5:57768064 Bda11g00498 Bda-Chr11:5304751 0 dispersed
Bda13g01021 Bda-Chr13:11961441 Bda05g00918 Bda-Chr5:57768064 2.68E-55 transposed
Bda02g00852 Bda-Chr2:49006320 Bda05g00918 Bda-Chr5:57768064 9.17E-23 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00918 K03320 - zju:107430906 837.025