Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g00927 | ATGGAGGGTCACCGCCCTCATCAGCATCAGCAACAGCAACATCATCATCATCTGCAACAACAACACCAGCAGCAGCAGCAGACGACTAGTAGCGTAAACGTGGACGTCGGCGACCGATTTCCGCAATGGAGTATGCAAGAGACGAAGGAGTTCTTGATGATCAGAGCCGAGCTCGATCGAAATTTCATGGAGACAAAAAGAAACAAACGTTTGTGGGAAGTAATTGCCAACATGATGAAAGAAAAGGGTTACAATCGAAGCGCAGAACAGTGCAAGTGCAAGTGGAAAAACCTCGTTACGCGTTATAAGGGTTGTGAAACGATGGAGCCAGAAGCCATGAGAGGTCAGTTTCCATTTTACGCCGAGCTTCAGGCAATTTTCGCCGCTCGGATGCAACGAATGCTATGGGCGGAAGCCGAGAGCGGGGCCAGCGGTTCAAAGAAGAAGGCAGTTAATCTATCGTCGGACGAAGAGGAGGAGAACGAAGAGAGCGAGGGAGATCAGAAGGGCAGTACGAGAAAGAGGAAGAAAAGCAAGACGAATTACGGAAGCAGCTTTAGTTTAGGAGGAAGCAGTAATAATCTGAGGGAGATGTTAGATGATTTCATGAAGCAGCAAATAAAGATGGAAATGGAATGGCGGGAAGCTTTCGAGGCGAGAGAGAAGGAGAGGAGGTTGAGAGAGATGGAGTGGAGACGAACAATGGAGGCGCTGGAAAACGAGAGAATGGTAATGGAGAGAAGCTGGAGGGAGAGAGAGGAGCAGAGAAGAGTAAGAGAGGAGGCTAGGGCTGAGAAGAGAGACGCTCTGATCACTGCTCTGCTAAACAAACTGAGAAGAGACGATCTTTAG | 852 | 48.83 | MEGHRPHQHQQQQHHHHLQQQHQQQQQTTSSVNVDVGDRFPQWSMQETKEFLMIRAELDRNFMETKRNKRLWEVIANMMKEKGYNRSAEQCKCKWKNLVTRYKGCETMEPEAMRGQFPFYAELQAIFAARMQRMLWAEAESGASGSKKKAVNLSSDEEEENEESEGDQKGSTRKRKKSKTNYGSSFSLGGSSNNLREMLDDFMKQQIKMEMEWREAFEAREKERRLREMEWRRTMEALENERMVMERSWREREEQRRVREEARAEKRDALITALLNKLRRDDL | 283 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 57859223 | 57860188 | - | Bda022083.1 | Bda05g00927 | 7239 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g00927 | 283 | MobiDBLite | consensus disorder prediction | 146 | 190 | - | - | |
| Bda05g00927 | 283 | PANTHER | TRANSCRIPTION FACTOR MYB FAMILY-RELATED | 1 | 281 | - | - | |
| Bda05g00927 | 283 | PANTHER | - | 1 | 281 | - | - | |
| Bda05g00927 | 283 | ProSiteProfiles | Myb-like domain profile. | 43 | 99 | IPR001005 | - | |
| Bda05g00927 | 283 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Bda05g00927 | 283 | MobiDBLite | consensus disorder prediction | 17 | 32 | - | - | |
| Bda05g00927 | 283 | Pfam | Myb/SANT-like DNA-binding domain | 42 | 126 | IPR044822 | - | |
| Bda05g00927 | 283 | CDD | GT1 | 41 | 106 | - | - | |
| Bda05g00927 | 283 | SMART | sant | 39 | 101 | IPR001005 | - | |
| Bda05g00927 | 283 | Gene3D | - | 43 | 104 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00927 | Bda-Chr5:57859223 | Bda03g00704 | Bda-Chr3:5968744 | 5.32E-08 | dispersed | |
| Bda05g00927 | Bda-Chr5:57859223 | Bda03g01683 | Bda-Chr3:56217197 | 1.80E-08 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 15925 | PF13837 | Myb_DNA-bind_4 | 1.80E-19 | CL0123 | Bda | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g00927 | - | - | pvy:116115135 | 333.954 |