Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00942 ATGCTTGCGTCCATGGACTTAAATGCTTCTCCAGTACCTGAAGAGGACGAGGAAAATTATGAGAGGCGTGCAGAAGAATATAGTGCGCCGGAAGACCGGGTAGAAACTGCAGTTGATATAGCACGCAGGGAGCGAGACGAAAGACGTAAAAAGTTAAAACGAGAACGCCCAGATGAGAAACCAATGCATGTATCTCAACCATATGTTTATGATTCGTTTTATCCAATGAAAAGCCTGAAGTCTCATGATAGAAACAGACTTCCTCCAGGGTGGTTGGATTGTCCTCCATATGGTAGTGAAATATCTTTCATTATTCCTTCTAAGGTTCCACTTGATGATACTTTCAATGACCAGATAGCTCCGGGTAAAAGATACTCCTTTAAGCAAGTGATTCATCAACAAAGACTTGGTTTGGTGATAGATCTGACAAATACTTCTCGTTACTACACAACAGTAGACTTGAAGAAAGAGGGTATCAAGCATGTTAAGATCCCATGCAAAGGAAGGGATTCCGTACCTGACAATGCCTCAGTTAATCAATTTGTCTATGAGGTCATTCAATTTTTTTTCCGCCAAAAACAGTCAAAGAAGTATATCCTTGTACATTGCACTCATGGGCATAATCGAACAGGATATATGATTATTCATTATCTTATGCGCTCTATGTCTATTTCTGTCACTCAGGCAATAAAAGTATTTTCTGATGCTCGCCCTCCTGGAATCTACAAGCCTGACTATATAGATGCGCTGTATGCCTTTTATCATGAAAGAAAGCCCGAAATAGTTGTCTGTCCCCAAACACCTGAGTGGAAAAGATCCTCTGAGCTTGATCTTAATGGTGAAGCATTGCCAGACGATGATGATGATGGAGTTTCTGCTGCTCCTTTTCATGATAATGATGACCATGTGGTGATGACGAACGATGATGTTTTGGGAGATGAAATACCTAGGGAGCAACAAGATGCCTTTCGACTCTTCTGCTATCAAATGCTTAAGTTGGGTGTTGGGGCAAGAGGAAATTCTCAGTTTCCTGGGTCACACCCAGTTTCTCTCAACAGGGATAATTTACAATTGTTAAGGCAGCGTTATTATTATGCCACATGGAAAGCTGATGGAACGCGATATATGATGCTAATTACTATGGATGGGTGTTACTTGGTTGATAGGAATTTCAATTTCCGCAGGGTGCAAATGAGGTTTCCCTGCAGAAACATGAATGATGGTCTTGTAGAGAGGGCTCATCATTATACATTGCTTGATGGGGAGATGATAATTGATACTGTGCCAGGCACACAGAAGCAAGAGAGAAGATATCTCATCTATGATCTCATGGCAATTAACAACATCTCTGTTATTGAGCGACCTTTCTATGAAAGATGGAAAATGCTCGAGAAGGAAGTAATTGAACCTCGTAACTCTGAGCGCCAGAAGATTTACCATTACAGATATGATCTGGAGCCATTCAGGGTAAGGAGGAAAGATTTTTGGTTGCTCTCTGCTGTTAATAAGGTTCTAAAGGAATTCATTCCGAAGCTTTCACATGAAGCGGATGGACTAATTTTCCAGGGTTGGGATGATCCCTATATTCCTCGCACACACGAAGGCCTTTTGAAATGGAAGTATGCCCAATTGAACTCCGTTGACTTCCTATTCGAGATGGTTGACGATGAGAACCAGCATCTTTTTCTCTATGAACGAGGAAAGAAGAAACTTATGGAAGGAAATAGAGTTGTATTTAGAGATGGTTCAGATCCCTCTTTTTATTCTGGGAAGATAATAGAGTGCACTTGGGATTCTGACCAACAGCAATGGGACTGTATGAGAATCAGGACTGATAAATCAACTCCAAATGATTTCAATACATATAAAAAGGTGATGCGAAGCATAAGAGACAATATCACTGAGGATATCTTGTTGAATGAGATTGATGAGATTATTCGTCTGCCCATGTATGCTGACAGGATAAAGATTGATAGTAAAGCACACCAGCACATAAATCGACGGAGATGA 2010 40.75 MLASMDLNASPVPEEDEENYERRAEEYSAPEDRVETAVDIARRERDERRKKLKRERPDEKPMHVSQPYVYDSFYPMKSLKSHDRNRLPPGWLDCPPYGSEISFIIPSKVPLDDTFNDQIAPGKRYSFKQVIHQQRLGLVIDLTNTSRYYTTVDLKKEGIKHVKIPCKGRDSVPDNASVNQFVYEVIQFFFRQKQSKKYILVHCTHGHNRTGYMIIHYLMRSMSISVTQAIKVFSDARPPGIYKPDYIDALYAFYHERKPEIVVCPQTPEWKRSSELDLNGEALPDDDDDGVSAAPFHDNDDHVVMTNDDVLGDEIPREQQDAFRLFCYQMLKLGVGARGNSQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITMDGCYLVDRNFNFRRVQMRFPCRNMNDGLVERAHHYTLLDGEMIIDTVPGTQKQERRYLIYDLMAINNISVIERPFYERWKMLEKEVIEPRNSERQKIYHYRYDLEPFRVRRKDFWLLSAVNKVLKEFIPKLSHEADGLIFQGWDDPYIPRTHEGLLKWKYAQLNSVDFLFEMVDDENQHLFLYERGKKKLMEGNRVVFRDGSDPSFYSGKIIECTWDSDQQQWDCMRIRTDKSTPNDFNTYKKVMRSIRDNITEDILLNEIDEIIRLPMYADRIKIDSKAHQHINRRR 669
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 57946444 57953411 - Bda022096.1 Bda05g00942 7254

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00942 669 MobiDBLite consensus disorder prediction 1 62 - -
Bda05g00942 669 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 179 248 IPR000387 GO:0016311|GO:0016791
Bda05g00942 669 Gene3D Protein tyrosine phosphatase superfamily 83 290 IPR029021 -
Bda05g00942 669 Pfam mRNA capping enzyme, catalytic domain 347 540 IPR001339 GO:0004484|GO:0005524|GO:0006370
Bda05g00942 669 CDD Adenylation_mRNA_capping 318 541 IPR001339 GO:0004484|GO:0005524|GO:0006370
Bda05g00942 669 ProSiteProfiles ATP-dependent DNA ligase family profile. 438 569 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Bda05g00942 669 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 307 541 - -
Bda05g00942 669 Gene3D - 580 648 IPR012340 -
Bda05g00942 669 Pfam mRNA capping enzyme, C-terminal domain 545 638 IPR013846 -
Bda05g00942 669 CDD RNA_5'-triphosphatase 90 251 - -
Bda05g00942 669 PANTHER MRNA-CAPPING ENZYME 3 668 - -
Bda05g00942 669 Gene3D DNA ligase/mRNA capping enzyme 299 540 - -
Bda05g00942 669 ProSiteProfiles Dual specificity protein phosphatase domain profile. 100 260 IPR020422 GO:0006470|GO:0008138
Bda05g00942 669 ProSitePatterns Tyrosine specific protein phosphatases active site. 201 211 IPR016130 GO:0016311|GO:0016791
Bda05g00942 669 PANTHER MRNA (GUANINE-N(7)-)-METHYLTRANSFERASE-RELATED 3 668 - -
Bda05g00942 669 Pfam Dual specificity phosphatase, catalytic domain 128 254 IPR000340 GO:0008138|GO:0016311
Bda05g00942 669 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 87 271 IPR029021 -
Bda05g00942 669 SMART dsp_5 109 256 IPR020422 GO:0006470|GO:0008138
Bda05g00942 669 MobiDBLite consensus disorder prediction 15 62 - -
Bda05g00942 669 PIRSF mRNA_capping_HCE 74 669 IPR017074 GO:0004484|GO:0006370|GO:0140818
Bda05g00942 669 SUPERFAMILY Nucleic acid-binding proteins 543 655 IPR012340 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00942 K13917 RNGTT; mRNA-capping enzyme [EC:2.7.7.50 3.6.1.74] - qsu:112006691 1059.67
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g852 . . . . . Bpe03g01015 . Bma10g00319 . . Cma03g00375 . Car03g00328 Car07g01025 Sed14g0660 Cpe10g00935 . Bhi03g02108 Tan03g0830 Cmetu08g1543 . Hepe04g0778 . . Cla04g00726 Cam04g0737 Cec04g0863 Cco04g0913 Clacu04g0781 Cmu04g0770 Cre04g0825 . . . . . Csa04g01589 Chy08g00661 . Blo07g01154 . . Bda05g00942 . . . . . Cmo03g00384 . . . . . . Cpe19g00296 . . . . . . . . . . . . . . . . . Cme08g02497
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda11g00846 . 23 333 Protein tyrosine phosphatase (PTP) family AT1G71860 66.7 9.7e-123 436.8
Bda15g00697 . 6 900 Protein tyrosine phosphatase (PTP) family AT5G23720 61.1 1.7e-299 1025.4
Bda03g01256 . 33 171 Protein tyrosine phosphatase (PTP) family AT3G06110 55.4 2.3e-40 162.2
Bda14g01416 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.7 2.4e-72 268.5
Bda14g00375 . 17 293 Protein tyrosine phosphatase (PTP) family AT3G52180 70.3 4.0e-114 407.9
Bda14g00209 . 33 289 Protein tyrosine phosphatase (PTP) family AT3G10940 73.6 3.7e-112 401.4
Bda01g01276 . 137 579 Protein tyrosine phosphatase (PTP) family AT3G01510 71.9 7.1e-198 686.8
Bda14g01411 . 3 209 Protein tyrosine phosphatase (PTP) family AT2G32960 53.7 9.7e-67 250.4
Bda13g01849 . 13 160 Protein tyrosine phosphatase (PTP) family AT2G32960 51.6 4.8e-50 194.9
Bda15g00865 . 35 142 Protein tyrosine phosphatase (PTP) family AT2G32960 59.4 8.6e-39 157.5
Bda07g00455 . 1 330 Protein tyrosine phosphatase (PTP) family AT2G35680 56.7 2.5e-99 359.0
Bda01g02034 . 6 269 Protein tyrosine phosphatase (PTP) family AT2G35680 51.7 6.1e-77 284.6
Bda01g02034 . 27 200 Protein tyrosine phosphatase (PTP) family AT5G56610 53.4 4.5e-45 177.9
Bda14g01411 . 35 209 Protein tyrosine phosphatase (PTP) family AT4G03960 66.3 1.8e-68 255.8
Bda13g01849 . 9 164 Protein tyrosine phosphatase (PTP) family AT4G03960 57.1 3.6e-53 204.9
Bda15g00865 . 24 142 Protein tyrosine phosphatase (PTP) family AT4G03960 60.5 3.3e-38 155.2
Bda13g01849 . 3 199 Protein tyrosine phosphatase (PTP) family AT3G02800 71.1 3.1e-84 308.1
Bda14g01411 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 59.5 1.9e-57 219.2
Bda15g00865 . 30 142 Protein tyrosine phosphatase (PTP) family AT3G02800 61.9 9.8e-38 153.7
Bda14g00109 . 1 187 Protein tyrosine phosphatase (PTP) family AT3G55270 61.4 2.3e-55 214.2
Bda13g01705 . 318 635 Protein tyrosine phosphatase (PTP) family AT5G39400 61.3 4.8e-108 388.3
Bda14g01451 BCT 32 615 Protein tyrosine phosphatase (PTP) family AT3G19420 66.8 5.1e-223 770.8
Bda15g00847 BCT 32 608 Protein tyrosine phosphatase (PTP) family AT3G19420 65.9 7.8e-216 746.9
Bda10g00214 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.5e-187 651.4
Bda10g00247 . 34 592 Protein tyrosine phosphatase (PTP) family AT3G19420 57.6 4.9e-186 647.9
Bda14g01451 BCT 42 615 Protein tyrosine phosphatase (PTP) family AT3G50110 59.4 2.0e-182 636.0
Bda15g00847 BCT 42 608 Protein tyrosine phosphatase (PTP) family AT3G50110 58.5 7.4e-177 617.5
Bda10g00214 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 59.5 8.2e-176 614.0
Bda10g00247 . 42 592 Protein tyrosine phosphatase (PTP) family AT3G50110 58.8 7.7e-174 607.4
Bda11g01706 BCT 4 155 Protein tyrosine phosphatase (PTP) family AT5G58160 61.4 8.7e-44 176.4
Bda15g00402 . 1 433 Protein tyrosine phosphatase (PTP) family AT3G10550 54.5 6.9e-146 515.0
Bda15g00402 . 2 435 Protein tyrosine phosphatase (PTP) family AT5G04540 52.3 3.1e-138 489.6
Bda07g00669 . 4 244 Protein tyrosine phosphatase (PTP) family AT3G44620 57.2 1.5e-75 279.6
Bda06g01290 . 10 276 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 9.4e-101 363.6
Bda05g00942 . 1 661 Protein tyrosine phosphatase (PTP) family AT3G09100 69.9 9.3e-287 982.6
Bda05g00942 . 5 661 Protein tyrosine phosphatase (PTP) family AT5G01290 65.6 1.3e-261 899.0
Bda05g00942 . 87 668 Protein tyrosine phosphatase (PTP) family AT5G28210 57.6 3.9e-186 648.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008771 1 1 1 1 1 0 4 1 1 1 0 0 0 1 1 1 0 2 2 1 1 1 1 0 1 1 0 2 5 1 33