Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g00947 | ATGTCCCACATTGATCTGGAATCCGGCGAGCATCTCCGGTCGGTAACGGGAAGTGACATAAGCGTCGAGGATAGCGTCTGTTTCTCCGATGCCGATGAGGGTTCCTGCTATTCTCAGTTCTTTTCGACGAACGGCGGCTCTTACGATGAGTACAGGTTCGCCTTCGTTTCCGAACCCCAAGCCGGGATCGTTTTGGACTCTCGAAGAGCTTCATCGGCGTCGGATTCTTCGGTGGAGGTCGAAATTGAAAGTGGGATGCCGGAGATTAAGGTGCATTTGGCTAAAGTAGAAAGAGATTGCAGAATTTGTCATTTGGGTTTGGAGAGTCATAGCCGTGAGTCTGGTGTTCCGATTGAATTGGGTTGTTCTTGCAAGGATGATTTGGCTGCTGCTCATAAGCACTGTGCTGAGACCTGGTTCAAAATTAAAGGAAATAAGACCTGCGAGATTTGTCATTCTATTGCTCGGAATGTGGTTGGAGCTCATGAGATTGAGGCGGTGGAGCAAAGCACCGAGACCGGCAATGCCTCGGCGACTGCACCAGCGCCTACTGCAGAGACCCAAAGCTTCTGGCGTGGACATAAGTTCCTGAATTTTCTACTTGCTTGTATGGTTTTTGCATTTGTAATTTCATGGCTCTTCCACTTCAATGTTTCATCA | 660 | 48.79 | MSHIDLESGEHLRSVTGSDISVEDSVCFSDADEGSCYSQFFSTNGGSYDEYRFAFVSEPQAGIVLDSRRASSASDSSVEVEIESGMPEIKVHLAKVERDCRICHLGLESHSRESGVPIELGCSCKDDLAAAHKHCAETWFKIKGNKTCEICHSIARNVVGAHEIEAVEQSTETGNASATAPAPTAETQSFWRGHKFLNFLLACMVFAFVISWLFHFNVSS | 220 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 57993974 | 57995015 | + | Bda033669 | Bda05g00947 | 7259 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g00947 | 220 | CDD | RING_CH-C4HC3_MARCH | 100 | 152 | - | - | |
| Bda05g00947 | 220 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 88 | 160 | IPR013083 | - | |
| Bda05g00947 | 220 | Pfam | RING-variant domain | 100 | 151 | IPR011016 | GO:0008270 | |
| Bda05g00947 | 220 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 92 | 158 | IPR011016 | GO:0008270 | |
| Bda05g00947 | 220 | PANTHER | OS01G0850200 PROTEIN | 2 | 220 | - | - | |
| Bda05g00947 | 220 | PANTHER | ZINC FINGER, RING-CH-TYPE | 2 | 220 | - | - | |
| Bda05g00947 | 220 | SUPERFAMILY | RING/U-box | 97 | 154 | - | - | |
| Bda05g00947 | 220 | SMART | ringv_2 | 99 | 152 | IPR011016 | GO:0008270 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda03g01381 | Bda05g00947 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g00277 | Bda-Chr5:44384939 | Bda05g00947 | Bda-Chr5:57993974 | 7.82E-110 | dispersed | |
| Bda05g00947 | Bda-Chr5:57993974 | Bda06g00296 | Bda-Chr6:4954067 | 7.17E-20 | dispersed | |
| Bda10g00414 | Bda-Chr10:36376864 | Bda05g00947 | Bda-Chr5:57993974 | 6.50E-09 | dispersed | |
| Bda14g00275 | Bda-Chr14:1858375 | Bda05g00947 | Bda-Chr5:57993974 | 6.49E-60 | wgd | |
| Bda15g00243 | Bda-Chr15:5071312 | Bda05g00947 | Bda-Chr5:57993974 | 1.06E-56 | wgd | |
| Bda03g01381 | Bda-Chr3:50097905 | Bda05g00947 | Bda-Chr5:57993974 | 3.26E-111 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g00947 | - | - | csv:101218915 | 346.665 |