Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00950 CCGGAGAGGTGGAAGGCCGATGAGACGTGGGTTCATGACTCCTCCATGGATCACAAACGGAGAGTTCCTCTCCGAGCATCCACCGGGGTCTGGAAAGCCTCCATCTTCATCATTGAACTCTTCTGGCTAACCCATCATCGTACTCTCAGTAAAAATGACTTTTTTTCGTGTGATATTTCTGATCGTGTGTGGGTTTACTTTTGTGCAGCCATTGAGTTTGCAGAGAGGTTGAGTTACTTTGGAATAGCAAGTAGCTTAATCATATATCTCACAACAGTTCTTCATCAAGATCTCAAGACAGCAGCCAAGAATGTCAATTACTGGACCGGGGTCACTACTTTGATGCCGCTTTTCGGCGCCTTCTTGGCCGATGCCTACTTTGGAACTGGAGGACATAAACCATCTCTCGAGAGCTTCGGAGCGGATCAATTCGACGACGAACACCCCAAAGAACGGAAGCAGAAAATGTCGTTTTTCAATTGGTGGAACTTCGGCCTGTGTTCTGGCCTTCTACTTGGCGTCACTGCCATTGTATATGTACAAGATCACCTTAGCTGGGGCCTGGCTGATGTTGTTCTCACTGCAATTATGGCCACATCGCTTGCTATTTTCATCATCGGTAGGCCGTTTTATCGTTACAGAGTAGCCATGGGAAGCCCCTTGACGCCCCTGTTCCAGGTTTTAGTAGCAGCCATTAGAAATAGAAACCTGCCTTATCCTTCCAATCCTGATCTTTTGTATGAATTTCCAAAGACAGAAAAGGTCGGAGGGAGATTTCTCGACAAAGCAGCTGTTGTTGAAGACTCCGGAAATAAAGCAAATCCATGGAGTCTAGCTACTGTAACTATGGTGGAGGAGATGAAGCTCATTCTCAATATAGTCCCCATTTGGATCACCTTTTTACCCTTTGGCATTTGTGCAGCCCAAGCTTCGACGTTCTTCACTTCTGGTTTAATGGACTCGCCATCGGAGGCTTTAAGCGGCATCGTTGACGACCCTCTTAGTAGTGGCGGCGACGGAGGTGAAAGCCGACGAAAAAAGTCGAGACTTATTTCCATGATCGACGAGGTTTACAGAAGATACAAGCAATACTACCAGCAAATGCAGGAAGTTGTGGCATCCTTCGAGTGCGTATCCGGCCTTGGCAGTGCTGCTCCATATGCAAATTTGGCTGTAAAAGCAATGTCTAAGCATTTCAGATGCCTGAAAAATGCAATTTTCGATCAACTTCAGTTCACCAACAAACCTCAGAGTAACTTTTCTCAAAAATATATTCAGAATTCAGGATTTCTCGATCAGCAACCTGCTTGGCGACCTCAACGGGGACTTCCTGAGCGGGCGGTGACTGTTCTTCGAGCCTGGCTGTTTGATCATTTCCTTCACCCTTACCCGACGGACACTGACAAGCTCATGTTGGCGAAACAGACAGGTCTGTCACGGAGCCAGGTTTCTAACTGGTTTATCAATGCAAGAGTGAGGCTTTGGAAGCCAATGGTAGAAGATATACACATGCTAGAAACAAGACAAGGTCAAAAAACTGTGCAGACGGAAGAACTGAATGTCAATAGCTCAAATGATCATTTGCCCTCTACAAACTCCCTCTCGGACAAATCGACCCTACTCGTCCAAGACGTTTGCTCCAAACGTACGAGAAACGATCTTCATGGAGAGGGACCGTTGAACATATCGTATAATAACCTGTCCATCCGACCATTGCAGGGGGCCAGTGGCGGTTTTAGGGGTGGTGTTTCACTCACTCTTGGCCTGCACCAGAATAATGTAGTTGATCTATCTGAGCCCTTTCAAATTACTGCAGTTCAACGTTATGGCTTAGGACTCGACGAGAGTACTAATGGTGACGGATCTGTCATTGGCGGTTTCGAAGTTCAAAGTCGACATTTTGCGAGAGACATGATCGGAGGGCAACTATTACATGATTTTGTTGGCTAA 1950 46.46 PERWKADETWVHDSSMDHKRRVPLRASTGVWKASIFIIELFWLTHHRTLSKNDFFSCDISDRVWVYFCAAIEFAERLSYFGIASSLIIYLTTVLHQDLKTAAKNVNYWTGVTTLMPLFGAFLADAYFGTGGHKPSLESFGADQFDDEHPKERKQKMSFFNWWNFGLCSGLLLGVTAIVYVQDHLSWGLADVVLTAIMATSLAIFIIGRPFYRYRVAMGSPLTPLFQVLVAAIRNRNLPYPSNPDLLYEFPKTEKVGGRFLDKAAVVEDSGNKANPWSLATVTMVEEMKLILNIVPIWITFLPFGICAAQASTFFTSGLMDSPSEALSGIVDDPLSSGGDGGESRRKKSRLISMIDEVYRRYKQYYQQMQEVVASFECVSGLGSAAPYANLAVKAMSKHFRCLKNAIFDQLQFTNKPQSNFSQKYIQNSGFLDQQPAWRPQRGLPERAVTVLRAWLFDHFLHPYPTDTDKLMLAKQTGLSRSQVSNWFINARVRLWKPMVEDIHMLETRQGQKTVQTEELNVNSSNDHLPSTNSLSDKSTLLVQDVCSKRTRNDLHGEGPLNISYNNLSIRPLQGASGGFRGGVSLTLGLHQNNVVDLSEPFQITAVQRYGLGLDESTNGDGSVIGGFEVQSRHFARDMIGGQLLHDFVG 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 58019524 58030708 + Bda022105.1 Bda05g00950 7262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00950 649 SUPERFAMILY Homeodomain-like 438 502 IPR009057 -
Bda05g00950 649 Gene3D - 440 501 - -
Bda05g00950 649 Gene3D MFS general substrate transporter like domains 3 127 IPR036259 -
Bda05g00950 649 Gene3D MFS general substrate transporter like domains 128 322 IPR036259 -
Bda05g00950 649 SMART prehox3 293 408 IPR006563 -
Bda05g00950 649 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 315 602 - -
Bda05g00950 649 CDD homeodomain 437 498 IPR001356 GO:0003677
Bda05g00950 649 Pfam POT family 125 315 IPR000109 GO:0016020|GO:0022857|GO:0055085
Bda05g00950 649 Pfam Associated with HOX 332 406 IPR006563 -
Bda05g00950 649 ProSiteProfiles 'Homeobox' domain profile. 434 497 IPR001356 GO:0003677
Bda05g00950 649 SMART HOX_1 437 501 IPR001356 GO:0003677
Bda05g00950 649 Pfam Homeobox KN domain 454 493 IPR008422 GO:0003677|GO:0006355
Bda05g00950 649 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 9 315 602 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00200 Bda05g00950 CCT
Bda03g01378 Bda05g00950 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g00950 Bda-Chr5:58019524 Bda09g01453 Bda-Chr9:46393445 1.36E-65 dispersed
Bda01g00200 Bda-Chr1:24772930 Bda05g00950 Bda-Chr5:58019524 3.27E-97 wgd
Bda15g00240 Bda-Chr15:5049919 Bda05g00950 Bda-Chr5:58019524 2.84E-107 wgd
Bda03g01377 Bda-Chr3:49928582 Bda05g00950 Bda-Chr5:58019524 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15927 PF00854 PTR2 5.20E-33 CL0015 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00950 - - tcc:18597667 452.595