Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g00964 ATGGCCGCCGTGGCTGTGAAAATGCTCTGCATTGCTACTCTGCTCACCCTTTTTGCAGTTTCGAATGCAAGAATCCCCGGTGCTTACGACGGCGGGCAGTGGCAGACTGCCCACGCTACTTTCTACGGCGGCAGTGACGCCTCTGGAACTATGGGCGGTGCTTGTGGTTACGGTAATTTATACAGCCAGGGCTACGGCGTAAACACGGCGGCGTTGAGCACAGCTTTGTTCAACAGTGGGCTGAGCTGCGGCGCTTGCTTCGAAATTAAGTGCGATAACGACCCAAAATGGTGCCACCCTGGAAGTCCTTCAATCTTGGTCACTGCCACTAACTTTTGCCCTCCTAACTACGCTCTTCCGAATGATAACGGGGGTTGGTGCAACCCTCCTCGGCCTCACTTCGACCTCGCCATGCCTATGTTTCTGAAGATCGCCGAGTACCGCGCCGGTATTGTCCCCGTTGCCTTTCGCCGCGTTCCATGTAGAAAGCAAGGCGGAATCAGATTCACAATCAACGGCTTCCGTTACTTCAACCTAGTTCTGATCACCAACGTCGCGGGGGCAGGAGACATCGTGCGGGTGAGCGTAAAGGGTACCAAGACTGGCTGGATGAGCATGAGCCGGAACTGGGGCCAGAACTGGCAGTCCAACGCCCTCTTGGTCGGCCAGTCCCTTTCCTTCAGAATAACCGGCAGCGACAGACGCACCTCCACATCGTGGAACGTGGCACCATCCAATTGGCAGTTCGGCCAGACTTTCGCCGGAAAGAATTTCCGCGTCTAA 783 55.81 MAAVAVKMLCIATLLTLFAVSNARIPGAYDGGQWQTAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNSGLSCGACFEIKCDNDPKWCHPGSPSILVTATNFCPPNYALPNDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAFRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTKTGWMSMSRNWGQNWQSNALLVGQSLSFRITGSDRRTSTSWNVAPSNWQFGQTFAGKNFRV 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 58134678 58136178 + Bda022122.1 Bda05g00964 7276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g00964 260 PANTHER EXPANSIN 5 259 - -
Bda05g00964 260 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 212 233 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 64 78 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 141 154 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 105 115 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 124 141 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 241 257 IPR002963 GO:0009664
Bda05g00964 260 PRINTS Expansin signature 91 102 IPR002963 GO:0009664
Bda05g00964 260 SUPERFAMILY Barwin-like endoglucanases 33 184 IPR036908 -
Bda05g00964 260 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 255 IPR007117 -
Bda05g00964 260 PRINTS Expansin/Lol pI family signature 33 48 IPR007118 GO:0005576
Bda05g00964 260 PRINTS Expansin/Lol pI family signature 203 217 IPR007118 GO:0005576
Bda05g00964 260 PRINTS Expansin/Lol pI family signature 51 69 IPR007118 GO:0005576
Bda05g00964 260 PRINTS Expansin/Lol pI family signature 241 255 IPR007118 GO:0005576
Bda05g00964 260 PRINTS Expansin/Lol pI family signature 73 91 IPR007118 GO:0005576
Bda05g00964 260 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Bda05g00964 260 SUPERFAMILY PHL pollen allergen 163 254 IPR036749 -
Bda05g00964 260 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 52 166 IPR007112 -
Bda05g00964 260 Pfam Expansin C-terminal domain 167 244 IPR007117 -
Bda05g00964 260 Gene3D - 19 162 IPR036908 -
Bda05g00964 260 Gene3D - 166 258 IPR036749 -
Bda05g00964 260 SMART dpbb_1 69 156 IPR007112 -
Bda05g00964 260 PANTHER EXPANSIN-A15 5 259 IPR002963 GO:0009664
Bda05g00964 260 Pfam Lytic transglycolase 69 155 IPR009009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00784 Bda05g00964 CCT
Bda03g00784 Bda05g00964 ECH
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g01211 Bda-Chr1:47394024 Bda05g00964 Bda-Chr5:58134678 1.40E-76 dispersed
Bda05g00964 Bda-Chr5:58134678 Bda09g01508 Bda-Chr9:46841799 1.18E-167 dispersed
Bda08g01191 Bda-Chr8:48014944 Bda05g00964 Bda-Chr5:58134678 9.14E-85 dispersed
Bda14g00191 Bda-Chr14:1364563 Bda05g00964 Bda-Chr5:58134678 1.09E-127 dispersed
Bda15g00274 Bda-Chr15:5518006 Bda05g00964 Bda-Chr5:58134678 3.64E-126 dispersed
Bda03g00726 Bda-Chr3:6128899 Bda05g00964 Bda-Chr5:58134678 1.97E-112 transposed
Bda01g00226 Bda-Chr1:26088656 Bda05g00964 Bda-Chr5:58134678 7.74E-134 wgd
Bda15g00228 Bda-Chr15:4971370 Bda05g00964 Bda-Chr5:58134678 1.71E-165 wgd
Bda02g00824 Bda-Chr2:48835106 Bda05g00964 Bda-Chr5:58134678 5.91E-170 wgd
Bda03g00784 Bda-Chr3:6554733 Bda05g00964 Bda-Chr5:58134678 2.89E-170 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g00964 - - csin:114261994 499.204