Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g01028 | GAGAGGCCGTTGTGGTTCCCTGGCAGCACCCCCCCTCCGTGGCTTGATGGCACTCTCCCCGGAGACTTTGGTTTTGATCCTCTTGGTCTAGGGTCTGATCCGGAGACTCTGAGATGGAACCAGCAATCGGAGATAGTACACTGCCGATGGGCGATGTTAGGCGCCGCCGGTATTTTCATCCCGGAGTTGCTCACTAAGATCGGCGTCCTCAATACCCCATCGTGGTACAGTGCCGGAGAGCTAAACTACTTCACCGACACGACCACCCTCTTTATAATCGAGCTCATTTTGATTGGATGGGCGGAGGGGAGAAGATGGGCCGACATCCTCAAGCCTGGAAGCGTCAACACCGACCCCATCTTCCCCAACAACAAGCTCACCGGCACTGACGTCGGCTACCCCGGCGGCCTCTGGTTCGACCCTCTCGGGTGGGGATCTGGATCGCCAGAGAAGATCAAGGAGTTAAGAACCAAGGAGATCAAGAACGGTAGACTGGCTATGTTGGCCGTGATGGGAGCGTGGTTCCAACACATCTACACCGGAACTGGCCCTATCGACAACCTCTTCGCCCACCTTTCCGATCCCGGCCACGCCACCGTTTTCGCTGTAAGTTGA | 615 | 56.91 | ERPLWFPGSTPPPWLDGTLPGDFGFDPLGLGSDPETLRWNQQSEIVHCRWAMLGAAGIFIPELLTKIGVLNTPSWYSAGELNYFTDTTTLFIIELILIGWAEGRRWADILKPGSVNTDPIFPNNKLTGTDVGYPGGLWFDPLGWGSGSPEKIKELRTKEIKNGRLAMLAVMGAWFQHIYTGTGPIDNLFAHLSDPGHATVFAVS | 204 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 58739367 | 58740053 | + | Bda022192.1 | Bda05g01028 | 7340 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g01028 | 204 | Gene3D | Chlorophyll a/b binding protein domain | 12 | 197 | - | - | |
| Bda05g01028 | 204 | Pfam | Chlorophyll A-B binding protein | 11 | 177 | IPR022796 | - | |
| Bda05g01028 | 204 | SUPERFAMILY | Chlorophyll a-b binding protein | 2 | 202 | - | - | |
| Bda05g01028 | 204 | PANTHER | CHLOROPHYLL A-B BINDING PROTEIN, CHLOROPLASTIC | 1 | 203 | - | - | |
| Bda05g01028 | 204 | PANTHER | CHLOROPHYLL A/B BINDING PROTEIN | 1 | 203 | IPR001344 | GO:0009765|GO:0016020 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda03g01539 | Bda-Chr3:54399518 | Bda05g01028 | Bda-Chr5:58739367 | 5.04E-144 | dispersed | |
| Bda05g01028 | Bda-Chr5:58739367 | Bda06g00542 | Bda-Chr6:7698513 | 7.09E-74 | dispersed | |
| Bda08g00723 | Bda-Chr8:8172572 | Bda05g01028 | Bda-Chr5:58739367 | 1.95E-33 | dispersed | |
| Bda14g00345 | Bda-Chr14:2494774 | Bda05g01028 | Bda-Chr5:58739367 | 1.46E-32 | wgd | |
| Bda03g01535 | Bda-Chr3:54300923 | Bda05g01028 | Bda-Chr5:58739367 | 5.95E-144 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g01028 | K08908 | - | nnu:104592885 | 414.461 |