Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01037 ATGGCCGACTACGACCTTACCCAACGTATCGCTCCCAATCTCGATCGTCACCTTGTGTTCCCGCTGCTTGAATTTCTTCAGGAACGGCAGCTTCACCCCGATGAGCAGATCCTCAAGTCTAAGATCGAGCTTCTCAATAAGACCAACATGGTCGACTACGCCATGGATATTCACAAGTCGCTTTACCATTCCGAAGAAGTGCCTCAGGATATGGTGGAGAGGAGAGCAGAGGTAGTCGCACGGCTTAAGGCTTTGGAAGAAGGTGCGGCGCCTATTGTTGCTTTTCTTCAGAATGCCTCTGCGGTTCAGGAGTTGAGGGCTGATAAGCATTATAATATTCAGATGCTTAATGATCGTTATCAGATCGGTCCGAACCAGATTGAGGCGCTGTATCAATATGCTAAGTTTCAGTTTGAGTGTGGAAACTACTCTGGAGCTGCAGATTATTTGTATCAGTACAGGGCCTTGTGCACAAATAGCGAAAGGAGTTTGAGTGCATTATGGGGAAAGCTGGCTGCAGAAATATTGATGCAGAATTGGGACATTGCTCTGGAAGAACTTAACCGATTGAAAGAAATTATTGACTCAAAGAGTTTTCAATCACCAATGAGTCAGGTCCAAAGCCGGATATGGCTAATGCATTGGAGTCTGTTCATCTTTTTTAATCATGATAATGGAAGAACACAGATTATTGACCTATTTAATCAAGACAAGTATTTAAATGCCATTCAAACTAATGCTCCCCATCTGTTACGCTACCTGGCCACTGCATTCATTGTGATATTGAATGATCCATTTCTTGGTAAACGAGTTGAAGATGGAAACTATTCAACTGTTCCATTGAGAGATGAGTTTCTAGAGAATGCACGTTTATTCATCTTTGAGACGTATTGCCAAATACATCGGCGGATAGAAATGAGTGTTCTTGCTGAGAAATTGAACTTGAATTATGAGGATGCTGAGAGATGGATTGCAAATCTTATTCGCGGCTCAAAGCTCGATGCCAGGATTGATTCAAAGTCGGGAACTGTCATCATGGAACCCAATCATCCAAATGTTTATGAGCAGCTGATAGACCACACCAAGGCATTATCAGGGCGAACTTACAAGTTAGTCAATCAGCTTCTAGAACATTCCCAGACTCAGGCAGCTCGATAA 1158 43.09 MADYDLTQRIAPNLDRHLVFPLLEFLQERQLHPDEQILKSKIELLNKTNMVDYAMDIHKSLYHSEEVPQDMVERRAEVVARLKALEEGAAPIVAFLQNASAVQELRADKHYNIQMLNDRYQIGPNQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSERSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKSFQSPMSQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTNAPHLLRYLATAFIVILNDPFLGKRVEDGNYSTVPLRDEFLENARLFIFETYCQIHRRIEMSVLAEKLNLNYEDAERWIANLIRGSKLDARIDSKSGTVIMEPNHPNVYEQLIDHTKALSGRTYKLVNQLLEHSQTQAAR 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 58813599 58816523 + Bda022203.1 Bda05g01037 7349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01037 385 Hamap Eukaryotic translation initiation factor 3 subunit E [EIF3E]. 2 377 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda05g01037 385 Gene3D - 264 381 - -
Bda05g01037 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 260 383 - -
Bda05g01037 385 Pfam eIF3 subunit 6 N terminal domain 5 137 IPR019010 -
Bda05g01037 385 Pfam PCI domain 277 347 IPR000717 -
Bda05g01037 385 SUPERFAMILY TPR-like 120 192 IPR011990 GO:0005515
Bda05g01037 385 PIRSF Transl_init_eIF3e 260 385 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda05g01037 385 PIRSF Transl_init_eIF3e 1 264 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda05g01037 385 ProSiteProfiles PCI domain profile. 185 351 IPR000717 -
Bda05g01037 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 260 IPR016650 GO:0003743|GO:0005737|GO:0005852
Bda05g01037 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 1 260 - -
Bda05g01037 385 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 280 364 - -
Bda05g01037 385 SMART PINT_4 280 364 IPR000717 -
Bda05g01037 385 SMART eIF3_N_2 5 137 IPR019010 -
Bda05g01037 385 SUPERFAMILY Winged helix DNA-binding domain 280 351 IPR036390 -
Bda05g01037 385 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT E 260 383 IPR016650 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01037 Bda-Chr5:58813599 Bda06g01170 Bda-Chr6:41136157 2.69E-22 dispersed
Bda15g00207 Bda-Chr15:4753226 Bda05g01037 Bda-Chr5:58813599 0 transposed
Bda03g01551 Bda-Chr3:54606949 Bda05g01037 Bda-Chr5:58813599 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01037 K03250 - rcu:8268657 696.041