Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01048 ATGAACAACTTGGCTGTTAATACTGAAGATTCTTTTGTGAATTTGCTTGAACTTGCTGCAAATGATGATCTCGAGGGGTTCAAAAGATTAGTGGAGCTTGATCCTTCTGGTATTGATGAAGTTGGCTTGTGGTATTGCCGTCAGAAAGGCTTGAAGCAAATGGTGAATGGGCATCGAACCCCATTAATGGTTGCGGCTACATATGGTAGCATCGAAGTTATGAAGCTGATTTTGTCATTATCTGATGCATATATTAACTGTGCGGCTGGATTCGATAAAACCACTGCCCTTCATTGTGCTGCCTCGGGTGGAGCAATTAACGTTGTTAATGCTGTGAAATTGCTTATAGCTGCTGGGGCTGATCCGAACTTGGTCGATGGAAGTGGACATTATCCTGTTGATGTTATTGTTGTTCCTCCAAGGCTTTTGGATGCCAAGTTGATCCTCGAAGAACTTCTGAAGACAAATGGTTATTCTGGTGAAGGCAAGCCAATGGCTTTGACAGGTATATTGAATTCAAATTCTCCTCCTCCTATGTCGTCGCCTAAAAAGATGTCCTCTGCTTTAGAGCTAGCCTTTTCGCCTATGAATTCAAAATTGAATGATCTTCACATCTCTTCTTCGTCGGAGAAGAAAGAATACCCTATAGACCTGTCTCTTCCTGACATCAAAAACAGCATATACTCAACAGATGAATTTCGAATGTATTCGTTTAAGGTACGGCCTTGTTCTCGTGCGTATTCGCACGACTGGACAGAGTGCCCTTTTGTCCATCCAGGAGAAAATGCTCGAAGAAGGGATCCGAGGAAGTACCATTACAGCTGCGTTCCTTGTCCAGATTTCCGAAAAGGAGCTTGTAGACGTGGAGATTTGTGCGAATACGCACATGGCGTTTTCGAGTGTTGGCTGCACCCAGCTCAGTATAGAACGCGGCTTTGCAAGGACGGAACTAGTTGTGCTAGAAGAGTTTGCTTCTTTGCCCACACTGATGAGGAGCTTCGCCCTTTGTACGTATCTACTGGCTCAGCCGTTCCGTCTCCTCGGTCTGGTTCTTCTGGTCCTCCGGTAATGGATTATGCCTCTGCCATGAATATCTTGCCTGGCTCCCCATCTTCAATGTCTGTAATGTCTCCCACTCCCTTCACTCCTCCCATGTCTCCTTCGGGTGCCCACTCTTCTTTGGCTTGGCCTCAGCCGAATGTTTTGGCATTGCATCTTCCCGGAAACAATCTTCAGTCGAGTCGCCTGAGATCATCCATAAATGCAAGAGACATTTTATTGGAGGATTTTGATTTACTTCCGGAGTTTGATGTTCAGCAACCACAGCTTCTGAATGATCTATCTTGTCTCTCTCAACTAAATATGGGTTCTAATTCTTTGAATTGTTCTGGTCGAACGAAAACCCTAACACCGTCGAATCTTGACGATCTGTTTTCTTCTGAGAGTTTATCTCCTAGATACACTGATCAGGCATTGGCTTCGGCTATTTTCTCCCCTACCCACAAGTCAGCCGTTCCTGGCCAATATCTGCATCAACAGAGTATGTTGTCTCCTATAAACACCAATTTCTCCCCTAAAAATGTGGATCACCCTCTTTTACAGGCATCTTTTGGAGTGCCTTCTGGAAGAATGTCTCCAAGAAATGTGGAGCCCATCTCGCCAATCAGCTCTCGTTTGTCAACGTTGGCTCAGCGAGAGAAACAGCAACAGTTTCGCAGCCTCAGCTCTCGGGAACTTGGTGCAAATTCTTTGAACGTTGGTGGGTCAGCAAGTAATTCTTGGTCGAAATGGGGACCGTCCAATGGAAATCCCACTGATGAATATGGTAAGCTCCGTAGATCTTCTTCGTTCGAGTTAGGAAATAACGGGGAAGAGCCCGATTTATCATGGGTTCAATCTCTAGTCAAAGAATCTCCTACTGATGTGAAGGAAAGGCAAGCTATGTCTTTTTCTGGCAATGCAAACTCCGTCAATCCATCGAATGTAAGTACCACAATGGACGCAACCGAGCATGCCGTTTTGGGAGCGTGGATTGAACAAATGCAGCTCGATAATCTTGTAGCTCAGCAAAATTAA 2076 45.09 MNNLAVNTEDSFVNLLELAANDDLEGFKRLVELDPSGIDEVGLWYCRQKGLKQMVNGHRTPLMVAATYGSIEVMKLILSLSDAYINCAAGFDKTTALHCAASGGAINVVNAVKLLIAAGADPNLVDGSGHYPVDVIVVPPRLLDAKLILEELLKTNGYSGEGKPMALTGILNSNSPPPMSSPKKMSSALELAFSPMNSKLNDLHISSSSEKKEYPIDLSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKYHYSCVPCPDFRKGACRRGDLCEYAHGVFECWLHPAQYRTRLCKDGTSCARRVCFFAHTDEELRPLYVSTGSAVPSPRSGSSGPPVMDYASAMNILPGSPSSMSVMSPTPFTPPMSPSGAHSSLAWPQPNVLALHLPGNNLQSSRLRSSINARDILLEDFDLLPEFDVQQPQLLNDLSCLSQLNMGSNSLNCSGRTKTLTPSNLDDLFSSESLSPRYTDQALASAIFSPTHKSAVPGQYLHQQSMLSPINTNFSPKNVDHPLLQASFGVPSGRMSPRNVEPISPISSRLSTLAQREKQQQFRSLSSRELGANSLNVGGSASNSWSKWGPSNGNPTDEYGKLRRSSSFELGNNGEEPDLSWVQSLVKESPTDVKERQAMSFSGNANSVNPSNVSTTMDATEHAVLGAWIEQMQLDNLVAQQN 691
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 58908454 58910529 - Bda022215.1 Bda05g01048 7360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01048 691 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
Bda05g01048 691 Gene3D - 274 335 - -
Bda05g01048 691 MobiDBLite consensus disorder prediction 587 610 - -
Bda05g01048 691 Gene3D - 5 150 IPR036770 -
Bda05g01048 691 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Bda05g01048 691 PANTHER ARM REPEAT CCCH-TYPE ZINC FINGER PROTEIN 1 688 - -
Bda05g01048 691 PANTHER UNKEMPT FAMILY MEMBER 1 688 IPR045234 -
Bda05g01048 691 Pfam Ankyrin repeats (3 copies) 24 126 IPR002110 GO:0005515
Bda05g01048 691 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 277 297 IPR000571 GO:0046872
Bda05g01048 691 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Bda05g01048 691 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Bda05g01048 691 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Bda05g01048 691 SUPERFAMILY Ankyrin repeat 18 137 IPR036770 -
Bda05g01048 691 SMART ANK_2a 92 124 IPR002110 GO:0005515
Bda05g01048 691 SMART ANK_2a 57 87 IPR002110 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g01613 Bda-Chr3:55407507 Bda05g01048 Bda-Chr5:58908454 0 dispersed
Bda05g00457 Bda-Chr5:50858516 Bda05g01048 Bda-Chr5:58908454 0 dispersed
Bda05g01048 Bda-Chr5:58908454 Bda11g00674 Bda-Chr11:6761347 0 dispersed
Bda05g01048 Bda-Chr5:58908454 Bda12g00153 Bda-Chr12:1353204 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15940 PF12796 Ank_2 1.30E-09 CL0465 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01048 - - mnt:21390368 1005.36