Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01056 ATGGAGAATTGCAGGAAATCCCCATTAAAGCCATGGAAGAAAGGTCCATCTAGAGGCAAAGGTGGCCCTCAGAATGCCTCGTGTGAATACCGAGGCGTTCGGCAAAGAACTTGGGGAAAGTGGGTGGCTGAAATTAGAGAGCCGAAAAAGAGAACTCGATTATGGTTAGGTTCATTTGCTACGGCTGAAGAAGCTGCTATGGCATACGACGAGGCTGCCCGGAAACTTTACGGTCCGGATGCTTACCTCAATCTTCCACACCTACAACCGAGCTCTATATCTCCGATCAAATCGCAAAGATTCAAATGGTTTCCTTCGAAAAATTTTATTTCCATGTTTCCATCTTGTGGGTTGCTCAATATAAATGCTCAACCCAGTGTTCATGTGATTCATCAGAGGCTTCAAGAGCTAAAACAAAATGGAGTTCTCAAACAAAACCCTTCTAATTCATCTTCCTGCAATTCAAAATTCGACAGTCAGATAATCAGCAATAAACCCTTTGCAGAGAATCATGGAGGGAAAGATAAGGTCGGGGATATCTCAACGGAAATGATGATTAGAGTTGAAGAGAAGCCACAGATTGATCTAAATGAGTTTCTTCAACAGCTAGGATTACTGAAAGATAATAATAACAGGTCTGAAGGAGCTGATGAGGCTACAGCAAGTTCAATGGCATCCGAATCTTCATTTAAAGACGACGGATATGAACTCGGCAACTTCACTGACAAGAGCTACAACTGGGATGCTCTGATTGAAATGCATGGCATTGCAGATCAAGCAACTGAAACTGTCAATTTCCAGCTATATGATGTCAATGAAGAACTGAGCTTCCCTTCCTCCATCTGGAACTTTTGA 855 42.57 MENCRKSPLKPWKKGPSRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARKLYGPDAYLNLPHLQPSSISPIKSQRFKWFPSKNFISMFPSCGLLNINAQPSVHVIHQRLQELKQNGVLKQNPSNSSSCNSKFDSQIISNKPFAENHGGKDKVGDISTEMMIRVEEKPQIDLNEFLQQLGLLKDNNNRSEGADEATASSMASESSFKDDGYELGNFTDKSYNWDALIEMHGIADQATETVNFQLYDVNEELSFPSSIWNF 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59056020 59056874 + Bda022224.1 Bda05g01056 7368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01056 284 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Bda05g01056 284 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Bda05g01056 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 1 281 - -
Bda05g01056 284 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2F 1 281 - -
Bda05g01056 284 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Bda05g01056 284 MobiDBLite consensus disorder prediction 1 27 - -
Bda05g01056 284 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Bda05g01056 284 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Bda05g01056 284 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Bda05g01056 284 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Bda05g01056 284 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00512 Bda-Chr1:32102098 Bda05g01056 Bda-Chr5:59056020 1.64E-35 dispersed
Bda05g01056 Bda-Chr5:59056020 Bda15g00305 Bda-Chr15:5872633 1.14E-27 dispersed
Bda14g00230 Bda-Chr14:1560956 Bda05g01056 Bda-Chr5:59056020 3.75E-31 dispersed
Bda14g00240 Bda-Chr14:1634605 Bda05g01056 Bda-Chr5:59056020 5.46E-27 dispersed
Bda05g01056 Bda-Chr5:59056020 Bda03g00273 Bda-Chr3:2403070 6.75E-30 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15941 PF00847 AP2 1.10E-14 CL0081 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01056 - - qsu:112016049 401.364