Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01068 ATGGAACCAAATGCTGGCACAGCTACTAGATCCAGCCCCGACGGGCGTTTAACTGACGACACTGGGCTCGATTCGCTCCAATTTCGCGAAGAAATTCAAAGATTGATTACTGCACCGCCGGAGAATGGTACTTCATTCACTGCGCTTCTGGAACTCCCGGCGACGCAGGCGATGGAACTCCTGAATTCGTCAAACTCTGATGGAGTCTCGAAGAGAGTGACTCTCTTCCACGGCGACCACAAACCTTTTTTCCATCCTGTCAGTGTAGATTCGACCGCTCCTCCCATCTCATCCCCGGTACAGCTTGCCGCAAAGTTTCCCGGCTTCACTGGGGAGCAGTCCCCGGAGGCGACAAGTTCTGTAGCTACGAATTCGAATGCAAATTTAGAGAAGGTGAAGAGCGAGCCCGTCGCCGAGGCCAACTCGACTCCCAACTCGTTAGATCCGTCATTGGAGAATGCGAATCAGAAGTCAGCAAAGAGAAAGGAGCCCGAGAAGAAGGGCAAAGGATCAGCGAAGAAGAGCAAAACCGAAAAATGGGAAAATTCTGAAAAGCTTCCATACGTTCACGTCCGAGCTCGACGCGGTGAAGCTACGGATAGCCATAGCCTGGCAGAGAGAGCGAGGAGAGAGAAAATAAATGCTCGTATGAAGTTGCTTCAAGAGCTGGTCCCCGGATGCAATAAGTTTTTTAAATTTAATTTGTTTGATTTGAGATTTGAGATTTGGGTATTATTATTTTGGATTTTCTGCCTAATTGGGAACTGTCAAATAAAATATAATTGTGGATCCTTGTCACTTCTTAATTTTTCTTCCTCTTTTGAGGGTCCATTGTACTCTCATCTACTTAGTTTCGTATACCACCCAAATTTGATAAAAACTGCACTGTCGACAGGGTCTACTTGGGATTGCAGTTTTGATAATATTCCGATACAGGTTTCGGGAACAGCTTTAGTTCTTGATGAAATCATCAATCACGTGCAGTCCTTGCAGCGCCAAGTCGAGTTTTTGTCAATGACACTTGCTGCTGTCAATCCAAGAATTGATTTTAACCTCGACAGTTTGTTTGCTGCAGAAAGTCCATCTCTTGTGGCGAGTAATTTTCCCGGCATGGTTACTCCTTTTTCGTGGCCAGAAGCTCCATCCATCGAAAACGGAAAACTATACCACCATCCGTTGCATCTCGACCTTATCCACCATGCATCTTGGGGAAGAGAGGATGATATTCGAAATTTTATTACTCCGGAGAATTCACTTTTGACCGACGACTCCCCAATCTCAGGTGCTTAG 1290 46.12 MEPNAGTATRSSPDGRLTDDTGLDSLQFREEIQRLITAPPENGTSFTALLELPATQAMELLNSSNSDGVSKRVTLFHGDHKPFFHPVSVDSTAPPISSPVQLAAKFPGFTGEQSPEATSSVATNSNANLEKVKSEPVAEANSTPNSLDPSLENANQKSAKRKEPEKKGKGSAKKSKTEKWENSEKLPYVHVRARRGEATDSHSLAERARREKINARMKLLQELVPGCNKFFKFNLFDLRFEIWVLLFWIFCLIGNCQIKYNCGSLSLLNFSSSFEGPLYSHLLSFVYHPNLIKTALSTGSTWDCSFDNIPIQVSGTALVLDEIINHVQSLQRQVEFLSMTLAAVNPRIDFNLDSLFAAESPSLVASNFPGMVTPFSWPEAPSIENGKLYHHPLHLDLIHHASWGREDDIRNFITPENSLLTDDSPISGA 429
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59121607 59125484 - Bda022234.1 Bda05g01068 7380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01068 429 MobiDBLite consensus disorder prediction 1 25 - -
Bda05g01068 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 197 349 IPR036638 GO:0046983
Bda05g01068 429 MobiDBLite consensus disorder prediction 138 154 - -
Bda05g01068 429 MobiDBLite consensus disorder prediction 108 182 - -
Bda05g01068 429 PANTHER TRANSCRIPTION FACTOR BHLH60 13 427 - -
Bda05g01068 429 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 13 427 IPR024097 GO:0006355
Bda05g01068 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 197 246 IPR011598 GO:0046983
Bda05g01068 429 MobiDBLite consensus disorder prediction 112 131 - -
Bda05g01068 429 MobiDBLite consensus disorder prediction 155 182 - -
Bda05g01068 429 Pfam Helix-loop-helix DNA-binding domain 201 225 IPR011598 GO:0046983
Bda05g01068 429 MobiDBLite consensus disorder prediction 1 18 - -
Bda05g01068 429 Gene3D - 194 349 IPR036638 GO:0046983
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g00603 Bda05g01068 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00603 Bda-Chr3:4999864 Bda05g01068 Bda-Chr5:59121607 1.73E-28 dispersed
Bda05g01068 Bda-Chr5:59121607 Bda04g00505 Bda-Chr4:53632747 4.67E-30 dispersed
Bda03g01607 Bda-Chr3:55365534 Bda05g01068 Bda-Chr5:59121607 1.33E-25 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15942 PF00010 HLH 0.00016 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01068 - - ath:AT3G57800 257.299