Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01088 ATGGTTGGTATGGGCCAAAAGGATGCTTATGTTGGTGATGAGGCTCAGTCGAAGAGAGGTATTTTGACACTAAAATACCCAATTGAGCATGGGATTGTTAGCAACTGGGATGACATGGAAAAAATCTGGCACCACACTTTTTATAACGAACTTCGTGTGGCTCCAGAAGAGCATCCAGTTCTACTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAGAAGATGACACAAATTATGTTTGAGACCTTCAACACTCCCGCAATGTATGTTGCCATCCAGGCTGTCCTTTCCCTTTATGCAAGTGGCCGTACGACTGGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCATACTGTTCCAATTTATGAAGGCTATGCCCTTCCACATGCCATCCTTCGATTGGACCTCGCAGGCCGCGATCTCACTGACGCCCTAATGAAAATCTTGACTGAACGGGGTTACTCTTTCACCACCACTGCTGAGCGGGAAATTGTTAGAGATGTGAAAGAGAAATTAGCCTACATTGCTCTCGACTACGAACAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTAGAGAAGAGCTACGAGCTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCAATGATCGGAATGGAAGCTGCTGGCATACACGAAACAACGTACAACTCAATCATGAAGTGTGACGTTGACATTAGGAAGGATCTCTATGGCAATATCGTGCTCAGCGGGGGTTCTACTATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAAATTACAGCATTAGCTCCGAGCAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGCTCTATTTTAGCTTCTCTCAGCACCTTCCAACAGGTACATAATTTTCTAATCAATCAAACAACAATTGTCTTTTGA 975 45.33 MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNFLINQTTIVF 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59231392 59232673 - Bda022253.1 Bda05g01088 7400

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01088 324 Gene3D - 2 312 - -
Bda05g01088 324 ProSitePatterns Actins and actin-related proteins signature. 61 73 IPR020902 -
Bda05g01088 324 Gene3D Actin; Chain A, domain 4 137 228 - -
Bda05g01088 324 SUPERFAMILY Actin-like ATPase domain 1 110 IPR043129 -
Bda05g01088 324 SUPERFAMILY Actin-like ATPase domain 104 312 IPR043129 -
Bda05g01088 324 Pfam Actin 7 312 IPR004000 -
Bda05g01088 324 SMART actin_3 1 323 IPR004000 -
Bda05g01088 324 PRINTS Actin signature 6 17 IPR004000 -
Bda05g01088 324 PRINTS Actin signature 97 116 IPR004000 -
Bda05g01088 324 PRINTS Actin signature 193 209 IPR004000 -
Bda05g01088 324 PRINTS Actin signature 18 40 IPR004000 -
Bda05g01088 324 PRINTS Actin signature 72 85 IPR004000 -
Bda05g01088 324 Gene3D - 95 295 - -
Bda05g01088 324 PANTHER ACTIN 1 313 IPR004000 -
Bda05g01088 324 CDD NBD_sugar-kinase_HSP70_actin 31 138 - -
Bda05g01088 324 PANTHER ACTIN-4 1 313 - -
Bda05g01088 324 ProSitePatterns Actins signature 1. 10 20 IPR004001 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01088 K10355 ACTF; actin, other eukaryote - csv:101221679 612.068
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01592 Bda05g01088 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01088 Bda-Chr5:59231392 Bda14g00128 Bda-Chr14:873558 0 dispersed
Bda05g00660 Bda-Chr5:54948986 Bda05g01088 Bda-Chr5:59231392 2.57E-42 transposed
Bda03g01592 Bda-Chr3:55221205 Bda05g01088 Bda-Chr5:59231392 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1271 . . . . Bpe04g01456 Bpe03g01148 . . Cmo06g00095 Cmo14g00419 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g02242 . Blo09g00434 Bda03g01592 Bda05g01088 . . . . Sed14g0483 . . Cma06g00102 . Car06g00084 Car14g00382 Cpe03g00368 . Bhi11g02537 Tan08g1503 Cmetu10g1839 Lac10g2624 Hepe05g0523 . . Cla10g01670 Cam10g1718 Cec10g1770 Cco10g1738 Clacu10g1739 Cmu10g2489 Cre10g1871 Lsi03g01737 Csa03g03574 Chy04g01779 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT2G37620 96.3 7.7e-214 739.6
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 7.7e-214 739.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 1.7e-213 738.4
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT2G37620 96.2 2.3e-189 658.3
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT2G37620 96.1 6.0e-174 607.1
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT2G37620 96.2 7.8e-174 606.7
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT5G59370 96.3 2.9e-213 737.6
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT5G59370 95.2 2.1e-211 731.5
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT5G59370 94.7 2.3e-210 728.0
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT5G59370 96.2 9.5e-188 652.9
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT5G59370 97.1 1.3e-173 605.9
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT5G59370 96.2 3.3e-172 601.3
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G46520 96.6 1.3e-213 738.8
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G46520 95.5 9.4e-212 732.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G46520 95.0 1.0e-210 729.2
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G46520 96.4 4.3e-188 654.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT3G46520 97.4 6.0e-174 607.1
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G46520 96.5 1.5e-172 602.4
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G12110 97.3 1.8e-215 745.0
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 2.9e-213 737.6
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G12110 95.8 6.5e-213 736.5
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G12110 96.7 7.8e-190 659.8
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G12110 96.8 2.7e-174 608.2
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT3G12110 96.4 2.7e-174 608.2
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 5.7e-209 723.4
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT3G18780 92.8 7.5e-209 723.0
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 2.2e-208 721.5
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT3G18780 92.9 5.8e-185 643.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT3G18780 93.3 2.4e-170 595.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT3G18780 92.2 4.4e-169 590.9
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.0e-209 724.9
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT1G49240 93.1 2.6e-209 724.5
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 7.5e-209 723.0
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT1G49240 92.9 5.8e-185 643.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT1G49240 93.3 2.4e-170 595.1
Bda09g01504 . 1 308 Cytoskeleton Gene Families AT1G49240 92.5 1.5e-169 592.4
Bda04g00339 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 2.6e-217 751.1
Bda11g01374 . 1 377 Cytoskeleton Gene Families AT5G09810 98.7 5.7e-217 750.0
Bda15g00349 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda15g00357 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda14g00128 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 1.3e-213 738.8
Bda03g01592 BCT 1 338 Cytoskeleton Gene Families AT5G09810 96.4 3.0e-189 657.9
Bda09g01504 . 1 309 Cytoskeleton Gene Families AT5G09810 96.4 7.8e-174 606.7
Bda05g01088 BCT 1 312 Cytoskeleton Gene Families AT5G09810 96.5 1.0e-173 606.3
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.9 2.7e-57 218.0
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT2G19760 77.1 7.9e-57 216.5
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT2G19760 74.4 3.7e-54 207.6
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT2G19760 74.4 6.3e-54 206.8
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 77.1 5.1e-56 213.8
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT4G29350 76.7 1.5e-55 212.2
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29350 75.9 3.3e-55 211.1
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29350 75.6 1.3e-54 209.1
Bda01g02037 BCT,CCT,ECH 1 87 Cytoskeleton Gene Families AT5G56600 79.3 2.0e-37 151.8
Bda09g01121 CCT,ECH 1 133 Cytoskeleton Gene Families AT4G29340 79.1 3.2e-61 231.1
Bda02g00405 . 1 133 Cytoskeleton Gene Families AT4G29340 79.1 1.6e-60 228.8
Bda01g02037 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 75.4 2.8e-57 218.0
Bda11g01079 BCT,CCT,ECH 1 131 Cytoskeleton Gene Families AT4G29340 71.6 7.6e-55 209.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g01088 Bda_Chr05 FPKM 20.437458 20.168089 29.247543 27.252312 20.198778 24.10182 23.390345 32.467495 33.402908