Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g01088 | ATGGTTGGTATGGGCCAAAAGGATGCTTATGTTGGTGATGAGGCTCAGTCGAAGAGAGGTATTTTGACACTAAAATACCCAATTGAGCATGGGATTGTTAGCAACTGGGATGACATGGAAAAAATCTGGCACCACACTTTTTATAACGAACTTCGTGTGGCTCCAGAAGAGCATCCAGTTCTACTCACAGAAGCCCCTCTTAACCCCAAGGCTAATCGTGAGAAGATGACACAAATTATGTTTGAGACCTTCAACACTCCCGCAATGTATGTTGCCATCCAGGCTGTCCTTTCCCTTTATGCAAGTGGCCGTACGACTGGTATTGTCCTGGATTCTGGAGATGGTGTCAGCCATACTGTTCCAATTTATGAAGGCTATGCCCTTCCACATGCCATCCTTCGATTGGACCTCGCAGGCCGCGATCTCACTGACGCCCTAATGAAAATCTTGACTGAACGGGGTTACTCTTTCACCACCACTGCTGAGCGGGAAATTGTTAGAGATGTGAAAGAGAAATTAGCCTACATTGCTCTCGACTACGAACAAGAGCTTGAAACATCAAAAACCAGTTCTTCGGTAGAGAAGAGCTACGAGCTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCAGATGCCCTGAAGTACTCTTCCAGCCATCAATGATCGGAATGGAAGCTGCTGGCATACACGAAACAACGTACAACTCAATCATGAAGTGTGACGTTGACATTAGGAAGGATCTCTATGGCAATATCGTGCTCAGCGGGGGTTCTACTATGTTCCCTGGTATTGCTGATAGGATGAGCAAGGAAATTACAGCATTAGCTCCGAGCAGCATGAAGATTAAGGTGGTAGCACCACCAGAGAGAAAGTACAGTGTCTGGATTGGAGGCTCTATTTTAGCTTCTCTCAGCACCTTCCAACAGGTACATAATTTTCTAATCAATCAAACAACAATTGTCTTTTGA | 975 | 45.33 | MVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDVKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQVHNFLINQTTIVF | 324 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 59231392 | 59232673 | - | Bda022253.1 | Bda05g01088 | 7400 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g01088 | 324 | Gene3D | - | 2 | 312 | - | - | |
| Bda05g01088 | 324 | ProSitePatterns | Actins and actin-related proteins signature. | 61 | 73 | IPR020902 | - | |
| Bda05g01088 | 324 | Gene3D | Actin; Chain A, domain 4 | 137 | 228 | - | - | |
| Bda05g01088 | 324 | SUPERFAMILY | Actin-like ATPase domain | 1 | 110 | IPR043129 | - | |
| Bda05g01088 | 324 | SUPERFAMILY | Actin-like ATPase domain | 104 | 312 | IPR043129 | - | |
| Bda05g01088 | 324 | Pfam | Actin | 7 | 312 | IPR004000 | - | |
| Bda05g01088 | 324 | SMART | actin_3 | 1 | 323 | IPR004000 | - | |
| Bda05g01088 | 324 | PRINTS | Actin signature | 6 | 17 | IPR004000 | - | |
| Bda05g01088 | 324 | PRINTS | Actin signature | 97 | 116 | IPR004000 | - | |
| Bda05g01088 | 324 | PRINTS | Actin signature | 193 | 209 | IPR004000 | - | |
| Bda05g01088 | 324 | PRINTS | Actin signature | 18 | 40 | IPR004000 | - | |
| Bda05g01088 | 324 | PRINTS | Actin signature | 72 | 85 | IPR004000 | - | |
| Bda05g01088 | 324 | Gene3D | - | 95 | 295 | - | - | |
| Bda05g01088 | 324 | PANTHER | ACTIN | 1 | 313 | IPR004000 | - | |
| Bda05g01088 | 324 | CDD | NBD_sugar-kinase_HSP70_actin | 31 | 138 | - | - | |
| Bda05g01088 | 324 | PANTHER | ACTIN-4 | 1 | 313 | - | - | |
| Bda05g01088 | 324 | ProSitePatterns | Actins signature 1. | 10 | 20 | IPR004001 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda03g01592 | Bda05g01088 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g01088 | Bda-Chr5:59231392 | Bda14g00128 | Bda-Chr14:873558 | 0 | dispersed | |
| Bda05g00660 | Bda-Chr5:54948986 | Bda05g01088 | Bda-Chr5:59231392 | 2.57E-42 | transposed | |
| Bda03g01592 | Bda-Chr3:55221205 | Bda05g01088 | Bda-Chr5:59231392 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g01088 | K10355 | - | csv:101221679 | 612.068 |