Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda05g01092 | ATGGAGCTCGCTCTCAGCCTCAAACCTTTCTCCTTCCTCGATAGAACCCAGAAAATCAACGAGGATTTGGGGTTTTGCATGGGGTTAGGGTGTGGGAGTGGCTTCTCTGCAACTGAAGAAGAGAAAATGGAGGCCGACAATGGTGGAGCTTCAGATCCGCCTCTTCAGCTTCGTCTTCTTCCTTCTGCTCCTGTTCCTCGTCGGATTCCTTTCCCTTGGCTTACCGACCACATGATATCTGAACCAGGATCTTCGGATGGGTCGGGAAAAGCTCTAGACGTGAATCAGCCACCGGCAGCGACGTCTGCGGCGGAGGACGGCGACGATAGGGCGGCTCTATCGTCTCCAAATAGCGCCGCTTCTTCATTTCTCGTGGTCGGAAAAGGCGAATCGGCAGGAAGAAGCAAGAGGGAGTTGGAAATGGAAACCGAAAGAACGACCTCTAGAGCAAGCGACGAAGAAGACAACGGCCTGTGTAGAAAAAAGCTCCGGCTGTCCAAAGAGCAGTCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGTACTTTAAATCCAAAGCAAAAGCTCGGTCTAGCTAAAAGGTTGAACCTTCGTCCTCGGCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAAGTGGATTGCGAATATTTAAAGAGATGTTGCGAGAAATTGACGGAAGAGAACAGAAGATTGCAGAAGGAACTTCAAGATCTCAGAGCCTTGAAAGCATCCCACCCTTTCTGCATGCAACTTCCAGCCACCACTCTCACCATGTGCCCCTCCTGCGAGCGAGGTCGCCACCGCCACCACCACTAA | 840 | 50.83 | MELALSLKPFSFLDRTQKINEDLGFCMGLGCGSGFSATEEEKMEADNGGASDPPLQLRLLPSAPVPRRIPFPWLTDHMISEPGSSDGSGKALDVNQPPAATSAAEDGDDRAALSSPNSAASSFLVVGKGESAGRSKRELEMETERTTSRASDEEDNGLCRKKLRLSKEQSAFLEESFKEHSTLNPKQKLGLAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEKLTEENRRLQKELQDLRALKASHPFCMQLPATTLTMCPSCERGRHRHHH | 279 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 59257255 | 59258389 | + | Bda022257.1 | Bda05g01092 | 7404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda05g01092 | 279 | MobiDBLite | consensus disorder prediction | 76 | 156 | - | - | |
Bda05g01092 | 279 | Coils | Coil | 222 | 252 | - | - | |
Bda05g01092 | 279 | Pfam | Homeodomain | 160 | 214 | IPR001356 | GO:0003677 | |
Bda05g01092 | 279 | MobiDBLite | consensus disorder prediction | 131 | 156 | - | - | |
Bda05g01092 | 279 | SMART | HOX_1 | 158 | 220 | IPR001356 | GO:0003677 | |
Bda05g01092 | 279 | SMART | halz | 216 | 259 | IPR003106 | GO:0006355|GO:0043565 | |
Bda05g01092 | 279 | Pfam | Homeobox associated leucine zipper | 216 | 250 | IPR003106 | GO:0006355|GO:0043565 | |
Bda05g01092 | 279 | PANTHER | HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 | 1 | 272 | - | - | |
Bda05g01092 | 279 | PANTHER | - | 1 | 272 | - | - | |
Bda05g01092 | 279 | ProSitePatterns | 'Homeobox' domain signature. | 191 | 214 | IPR017970 | GO:0000981|GO:0006355 | |
Bda05g01092 | 279 | CDD | homeodomain | 160 | 217 | IPR001356 | GO:0003677 | |
Bda05g01092 | 279 | Gene3D | - | 164 | 214 | - | - | |
Bda05g01092 | 279 | ProSiteProfiles | 'Homeobox' domain profile. | 160 | 216 | IPR001356 | GO:0003677 | |
Bda05g01092 | 279 | SUPERFAMILY | Homeodomain-like | 160 | 225 | IPR009057 | - | |
Bda05g01092 | 279 | Coils | Coil | 136 | 156 | - | - | |
Bda05g01092 | 279 | Pfam | HD-ZIP protein N terminus | 36 | 128 | IPR006712 | GO:0005634 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda04g00754 | Bda-Chr4:56760556 | Bda05g01092 | Bda-Chr5:59257255 | 1.15E-15 | dispersed | |
Bda05g01092 | Bda-Chr5:59257255 | Bda14g01299 | Bda-Chr14:14333252 | 1.65E-59 | dispersed | |
Bda05g01092 | Bda-Chr5:59257255 | Bda03g00154 | Bda-Chr3:1282273 | 1.35E-56 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
15946 | PF04618 | HD-ZIP_N | 6.20E-07 | No_clan | Bda | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda05g01092 | K09338 | - | qsu:112028347 | 378.637 |