Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01092 ATGGAGCTCGCTCTCAGCCTCAAACCTTTCTCCTTCCTCGATAGAACCCAGAAAATCAACGAGGATTTGGGGTTTTGCATGGGGTTAGGGTGTGGGAGTGGCTTCTCTGCAACTGAAGAAGAGAAAATGGAGGCCGACAATGGTGGAGCTTCAGATCCGCCTCTTCAGCTTCGTCTTCTTCCTTCTGCTCCTGTTCCTCGTCGGATTCCTTTCCCTTGGCTTACCGACCACATGATATCTGAACCAGGATCTTCGGATGGGTCGGGAAAAGCTCTAGACGTGAATCAGCCACCGGCAGCGACGTCTGCGGCGGAGGACGGCGACGATAGGGCGGCTCTATCGTCTCCAAATAGCGCCGCTTCTTCATTTCTCGTGGTCGGAAAAGGCGAATCGGCAGGAAGAAGCAAGAGGGAGTTGGAAATGGAAACCGAAAGAACGACCTCTAGAGCAAGCGACGAAGAAGACAACGGCCTGTGTAGAAAAAAGCTCCGGCTGTCCAAAGAGCAGTCGGCTTTTCTCGAAGAAAGCTTCAAAGAACACAGTACTTTAAATCCAAAGCAAAAGCTCGGTCTAGCTAAAAGGTTGAACCTTCGTCCTCGGCAAGTAGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACGAAGTTGAAGCAGACAGAAGTGGATTGCGAATATTTAAAGAGATGTTGCGAGAAATTGACGGAAGAGAACAGAAGATTGCAGAAGGAACTTCAAGATCTCAGAGCCTTGAAAGCATCCCACCCTTTCTGCATGCAACTTCCAGCCACCACTCTCACCATGTGCCCCTCCTGCGAGCGAGGTCGCCACCGCCACCACCACTAA 840 50.83 MELALSLKPFSFLDRTQKINEDLGFCMGLGCGSGFSATEEEKMEADNGGASDPPLQLRLLPSAPVPRRIPFPWLTDHMISEPGSSDGSGKALDVNQPPAATSAAEDGDDRAALSSPNSAASSFLVVGKGESAGRSKRELEMETERTTSRASDEEDNGLCRKKLRLSKEQSAFLEESFKEHSTLNPKQKLGLAKRLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCEKLTEENRRLQKELQDLRALKASHPFCMQLPATTLTMCPSCERGRHRHHH 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59257255 59258389 + Bda022257.1 Bda05g01092 7404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01092 279 MobiDBLite consensus disorder prediction 76 156 - -
Bda05g01092 279 Coils Coil 222 252 - -
Bda05g01092 279 Pfam Homeodomain 160 214 IPR001356 GO:0003677
Bda05g01092 279 MobiDBLite consensus disorder prediction 131 156 - -
Bda05g01092 279 SMART HOX_1 158 220 IPR001356 GO:0003677
Bda05g01092 279 SMART halz 216 259 IPR003106 GO:0006355|GO:0043565
Bda05g01092 279 Pfam Homeobox associated leucine zipper 216 250 IPR003106 GO:0006355|GO:0043565
Bda05g01092 279 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 1 272 - -
Bda05g01092 279 PANTHER - 1 272 - -
Bda05g01092 279 ProSitePatterns 'Homeobox' domain signature. 191 214 IPR017970 GO:0000981|GO:0006355
Bda05g01092 279 CDD homeodomain 160 217 IPR001356 GO:0003677
Bda05g01092 279 Gene3D - 164 214 - -
Bda05g01092 279 ProSiteProfiles 'Homeobox' domain profile. 160 216 IPR001356 GO:0003677
Bda05g01092 279 SUPERFAMILY Homeodomain-like 160 225 IPR009057 -
Bda05g01092 279 Coils Coil 136 156 - -
Bda05g01092 279 Pfam HD-ZIP protein N terminus 36 128 IPR006712 GO:0005634
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda04g00754 Bda-Chr4:56760556 Bda05g01092 Bda-Chr5:59257255 1.15E-15 dispersed
Bda05g01092 Bda-Chr5:59257255 Bda14g01299 Bda-Chr14:14333252 1.65E-59 dispersed
Bda05g01092 Bda-Chr5:59257255 Bda03g00154 Bda-Chr3:1282273 1.35E-56 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15946 PF04618 HD-ZIP_N 6.20E-07 No_clan Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01092 K09338 - qsu:112028347 378.637