Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda05g01095 | ATGAACTCGAAATATCGTCAGACGGACAAGATCATGGCTCCTGGAGGTGGTGCTTATGAAGAAGTTCTACAATCCCACCTGTCGGTTTCTGATTATGACATAACGGCAGCAAAACCAGACATAAGTTCTTCTTTTACAAAACTTTCAGTCGGTAGACGCGAAATATCTTCGACCAGTGGTGTTCACGAGTTGCTCCAGTGTCCTGTCTGTCTAAATTTGATGTACCCTCCAATTCATCAGTTTTCTTTTAATCGTTTACATCGATTCCTTATTTACAAACGTGTTTTGAAAGTTGGATGCCCAAATGGCCACACACTCTGTTCCAATTGCAAGATCAAAGTGCATAACTGTTGCCCAACTTGCCAAAACGAACTAGGGGATATTAGGTGCCTGGCTTTGGAAAAGGTGGCTGAATCTTTAGAACTTCCATGCCAATATCAGAGCTTAGGGTGTAGTGATATTTTTCCGTACTACTCGAAGCTTAAACATGAGCAAAGCTGCCATTTCCGGCCCTTCAATTGCCCCTATGCTGGCTCTGAGTGCTCCGTTATGGGCGACATTCCAACCCTCGTTGCACATCTCAAGGACGATCACAAGGTCGACATGCACGACGGTTGTACGTTCAACCATCGATACGTCAAATCAAATCCCGACGAAGTGGAAAACGCCACTTGGATGCTTACAGTGTTCAATTGCTTTGGACGGCAATTCTGCTTACACTTTGAGGCGTTCCTTTTGGGCACTTTGCCAGTTTATATGGCGTTTGTCCGGTTCATGGGAGACGACATTGAAGCAAAGAAATTCAACTACAGCTTAGAAGTAGGTGGCTATGGGAGAAAGCTAATATGGCAGGGAATTCCGAGGAGCATTCGCCAAGATCATATGAAAGTACGCGATAGCCAAGACGGCCTTATTATTCAGAAGAATCTCGCACTTTACTTTTCCGGCGGAGACAAGAAAGAGCTCAAGTTACGGGTAACTGGCCGAATTTGGAAAGAAGAATGA | 1005 | 44.68 | MNSKYRQTDKIMAPGGGAYEEVLQSHLSVSDYDITAAKPDISSSFTKLSVGRREISSTSGVHELLQCPVCLNLMYPPIHQFSFNRLHRFLIYKRVLKVGCPNGHTLCSNCKIKVHNCCPTCQNELGDIRCLALEKVAESLELPCQYQSLGCSDIFPYYSKLKHEQSCHFRPFNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGTLPVYMAFVRFMGDDIEAKKFNYSLEVGGYGRKLIWQGIPRSIRQDHMKVRDSQDGLIIQKNLALYFSGGDKKELKLRVTGRIWKEE | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 59295629 | 59297377 | + | Bda022260.2 | Bda05g01095 | 7407 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda05g01095 | 334 | ProSiteProfiles | Zinc finger SIAH-type profile. | 139 | 199 | IPR013010 | GO:0008270 | |
Bda05g01095 | 334 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 193 | IPR013083 | - | |
Bda05g01095 | 334 | Pfam | Seven in absentia protein family | 128 | 327 | IPR018121 | GO:0005737|GO:0006511|GO:0007275 | |
Bda05g01095 | 334 | SUPERFAMILY | TRAF domain-like | 139 | 331 | - | - | |
Bda05g01095 | 334 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 194 | 327 | IPR008974 | GO:0005515 | |
Bda05g01095 | 334 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE | 12 | 333 | - | - | |
Bda05g01095 | 334 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 12 | 333 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda05g01095 | Bda-Chr5:59295629 | Bda11g00212 | Bda-Chr11:2638936 | 4.26E-153 | dispersed | |
Bda03g01584 | Bda-Chr3:55093329 | Bda05g01095 | Bda-Chr5:59295629 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda05g01095 | K04506 | - | rcu:8260973 | 523.472 |