Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01095 ATGAACTCGAAATATCGTCAGACGGACAAGATCATGGCTCCTGGAGGTGGTGCTTATGAAGAAGTTCTACAATCCCACCTGTCGGTTTCTGATTATGACATAACGGCAGCAAAACCAGACATAAGTTCTTCTTTTACAAAACTTTCAGTCGGTAGACGCGAAATATCTTCGACCAGTGGTGTTCACGAGTTGCTCCAGTGTCCTGTCTGTCTAAATTTGATGTACCCTCCAATTCATCAGTTTTCTTTTAATCGTTTACATCGATTCCTTATTTACAAACGTGTTTTGAAAGTTGGATGCCCAAATGGCCACACACTCTGTTCCAATTGCAAGATCAAAGTGCATAACTGTTGCCCAACTTGCCAAAACGAACTAGGGGATATTAGGTGCCTGGCTTTGGAAAAGGTGGCTGAATCTTTAGAACTTCCATGCCAATATCAGAGCTTAGGGTGTAGTGATATTTTTCCGTACTACTCGAAGCTTAAACATGAGCAAAGCTGCCATTTCCGGCCCTTCAATTGCCCCTATGCTGGCTCTGAGTGCTCCGTTATGGGCGACATTCCAACCCTCGTTGCACATCTCAAGGACGATCACAAGGTCGACATGCACGACGGTTGTACGTTCAACCATCGATACGTCAAATCAAATCCCGACGAAGTGGAAAACGCCACTTGGATGCTTACAGTGTTCAATTGCTTTGGACGGCAATTCTGCTTACACTTTGAGGCGTTCCTTTTGGGCACTTTGCCAGTTTATATGGCGTTTGTCCGGTTCATGGGAGACGACATTGAAGCAAAGAAATTCAACTACAGCTTAGAAGTAGGTGGCTATGGGAGAAAGCTAATATGGCAGGGAATTCCGAGGAGCATTCGCCAAGATCATATGAAAGTACGCGATAGCCAAGACGGCCTTATTATTCAGAAGAATCTCGCACTTTACTTTTCCGGCGGAGACAAGAAAGAGCTCAAGTTACGGGTAACTGGCCGAATTTGGAAAGAAGAATGA 1005 44.68 MNSKYRQTDKIMAPGGGAYEEVLQSHLSVSDYDITAAKPDISSSFTKLSVGRREISSTSGVHELLQCPVCLNLMYPPIHQFSFNRLHRFLIYKRVLKVGCPNGHTLCSNCKIKVHNCCPTCQNELGDIRCLALEKVAESLELPCQYQSLGCSDIFPYYSKLKHEQSCHFRPFNCPYAGSECSVMGDIPTLVAHLKDDHKVDMHDGCTFNHRYVKSNPDEVENATWMLTVFNCFGRQFCLHFEAFLLGTLPVYMAFVRFMGDDIEAKKFNYSLEVGGYGRKLIWQGIPRSIRQDHMKVRDSQDGLIIQKNLALYFSGGDKKELKLRVTGRIWKEE 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59295629 59297377 + Bda022260.2 Bda05g01095 7407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01095 334 ProSiteProfiles Zinc finger SIAH-type profile. 139 199 IPR013010 GO:0008270
Bda05g01095 334 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 193 IPR013083 -
Bda05g01095 334 Pfam Seven in absentia protein family 128 327 IPR018121 GO:0005737|GO:0006511|GO:0007275
Bda05g01095 334 SUPERFAMILY TRAF domain-like 139 331 - -
Bda05g01095 334 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 194 327 IPR008974 GO:0005515
Bda05g01095 334 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINAT2-LIKE 12 333 - -
Bda05g01095 334 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 12 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01095 Bda-Chr5:59295629 Bda11g00212 Bda-Chr11:2638936 4.26E-153 dispersed
Bda03g01584 Bda-Chr3:55093329 Bda05g01095 Bda-Chr5:59295629 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01095 K04506 - rcu:8260973 523.472