Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bda05g01127 | ATGAACGACTTGTTCTCTTCCCGGTCTTTCTCCCGCGATCGAACAGGCGTTGAAATGACGAATTCGAATTCACCGGCCGCCGTCAATCTCGACAAGTTCTTCGAGGACGTTGAGTCGGTGAAGGACGAGCTGAAGGAGCTCGACGATTTGTATACTCGACTGAAACACTCTCATGAGCAGAGCAAGACTCTCCACAACGCAAGGACCGTGAAGGACCTCCGTTCTCGAATGGACTCCGATGTATCGCTCGCTCTCAAGAAAGCGAAGCTCATTAAGGTCCGGTTGGAAGCCTTAGACAGGGCTAATGCTGCTAATCGGAGCTTACCTGGCTGCGGAACCGGATCTTCGTCGGACCGGACCAGAATGTCGGTAGTCAACCGGCTGAGGAAGAAATTGCAGGAATCTATGGAGAGCTTCAACAATCTGAGACAGGAGATCTCATCGGAATACAGAGATACCGTACAGCGGAGGTACTACACCGTCACCGGAGAAAATCCCGACGAGAAAACCATTGACATATTGATCTCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCGATTCAAGAACAAGGAAGAGGCAGAGTTTTGGACACCATTAATGAGATTCAAGAGAGGCACGATGCAGTAAAAGATATGGAGAAGAACCTCAAGGAACTCCACCAGGTTTTCATGGATATGGCCGTGTTGGTGCAGGCTCAAGGAGAGCACCTCGACGACATCGAGAGCCAAGTGGCAAGAGCGCATTCGTTCGTCAGAGGCGGAACGCAGGAGTTGCATACGGCGAGGGTATATCAGAAAAATACACGAAAATGGGTGATTATTTCCATTGTTGCTTCGGTGATTATCATCATTGTGCTTGTTCTCATAATTGTTAAGCCTGGGAGTAATAGTGGTAATTCATCGTCACCATAG | 915 | 48.96 | MNDLFSSRSFSRDRTGVEMTNSNSPAAVNLDKFFEDVESVKDELKELDDLYTRLKHSHEQSKTLHNARTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRANAANRSLPGCGTGSSSDRTRMSVVNRLRKKLQESMESFNNLRQEISSEYRDTVQRRYYTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFMDMAVLVQAQGEHLDDIESQVARAHSFVRGGTQELHTARVYQKNTRKWVIISIVASVIIIIVLVLIIVKPGSNSGNSSSP | 304 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
5 | 59493476 | 59494848 | - | Bda022293.1 | Bda05g01127 | 7439 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bda05g01127 | 304 | SUPERFAMILY | t-snare proteins | 29 | 255 | IPR010989 | GO:0016020|GO:0016192 | |
Bda05g01127 | 304 | CDD | SynN | 30 | 187 | IPR006011 | GO:0016020 | |
Bda05g01127 | 304 | CDD | SNARE_syntaxin1-like | 199 | 259 | - | - | |
Bda05g01127 | 304 | Gene3D | - | 28 | 160 | - | - | |
Bda05g01127 | 304 | Gene3D | - | 195 | 293 | - | - | |
Bda05g01127 | 304 | PANTHER | SYNTAXIN | 8 | 292 | IPR045242 | - | |
Bda05g01127 | 304 | SMART | tSNARE_6 | 195 | 262 | IPR000727 | - | |
Bda05g01127 | 304 | Coils | Coil | 125 | 149 | - | - | |
Bda05g01127 | 304 | MobiDBLite | consensus disorder prediction | 1 | 23 | - | - | |
Bda05g01127 | 304 | Coils | Coil | 200 | 220 | - | - | |
Bda05g01127 | 304 | ProSitePatterns | Syntaxin / epimorphin family signature. | 206 | 245 | IPR006012 | GO:0005484|GO:0006886|GO:0016020 | |
Bda05g01127 | 304 | Pfam | SNARE domain | 238 | 288 | IPR000727 | - | |
Bda05g01127 | 304 | Pfam | Syntaxin | 32 | 235 | IPR006011 | GO:0016020 | |
Bda05g01127 | 304 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 200 | 262 | IPR000727 | - | |
Bda05g01127 | 304 | Coils | Coil | 30 | 57 | - | - | |
Bda05g01127 | 304 | PANTHER | BNAA05G27280D PROTEIN | 8 | 292 | - | - | |
Bda05g01127 | 304 | SMART | SynN_4 | 25 | 151 | IPR006011 | GO:0016020 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Bda02g00552 | Bda-Chr2:46377171 | Bda05g01127 | Bda-Chr5:59493476 | 4.62E-44 | dispersed | |
Bda03g00659 | Bda-Chr3:5600504 | Bda05g01127 | Bda-Chr5:59493476 | 8.79E-93 | dispersed | |
Bda05g01127 | Bda-Chr5:59493476 | Bda09g01276 | Bda-Chr9:44512231 | 7.02E-123 | dispersed | |
Bda01g00422 | Bda-Chr1:30755288 | Bda05g01127 | Bda-Chr5:59493476 | 2.68E-146 | wgd | |
Bda03g00658 | Bda-Chr3:5593717 | Bda05g01127 | Bda-Chr5:59493476 | 5.97E-148 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Bda05g01127 | K08486 | - | csv:101208931 | 456.062 |