Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01127 ATGAACGACTTGTTCTCTTCCCGGTCTTTCTCCCGCGATCGAACAGGCGTTGAAATGACGAATTCGAATTCACCGGCCGCCGTCAATCTCGACAAGTTCTTCGAGGACGTTGAGTCGGTGAAGGACGAGCTGAAGGAGCTCGACGATTTGTATACTCGACTGAAACACTCTCATGAGCAGAGCAAGACTCTCCACAACGCAAGGACCGTGAAGGACCTCCGTTCTCGAATGGACTCCGATGTATCGCTCGCTCTCAAGAAAGCGAAGCTCATTAAGGTCCGGTTGGAAGCCTTAGACAGGGCTAATGCTGCTAATCGGAGCTTACCTGGCTGCGGAACCGGATCTTCGTCGGACCGGACCAGAATGTCGGTAGTCAACCGGCTGAGGAAGAAATTGCAGGAATCTATGGAGAGCTTCAACAATCTGAGACAGGAGATCTCATCGGAATACAGAGATACCGTACAGCGGAGGTACTACACCGTCACCGGAGAAAATCCCGACGAGAAAACCATTGACATATTGATCTCTACAGGGGAAAGCGAGACATTCTTGCAGAAAGCGATTCAAGAACAAGGAAGAGGCAGAGTTTTGGACACCATTAATGAGATTCAAGAGAGGCACGATGCAGTAAAAGATATGGAGAAGAACCTCAAGGAACTCCACCAGGTTTTCATGGATATGGCCGTGTTGGTGCAGGCTCAAGGAGAGCACCTCGACGACATCGAGAGCCAAGTGGCAAGAGCGCATTCGTTCGTCAGAGGCGGAACGCAGGAGTTGCATACGGCGAGGGTATATCAGAAAAATACACGAAAATGGGTGATTATTTCCATTGTTGCTTCGGTGATTATCATCATTGTGCTTGTTCTCATAATTGTTAAGCCTGGGAGTAATAGTGGTAATTCATCGTCACCATAG 915 48.96 MNDLFSSRSFSRDRTGVEMTNSNSPAAVNLDKFFEDVESVKDELKELDDLYTRLKHSHEQSKTLHNARTVKDLRSRMDSDVSLALKKAKLIKVRLEALDRANAANRSLPGCGTGSSSDRTRMSVVNRLRKKLQESMESFNNLRQEISSEYRDTVQRRYYTVTGENPDEKTIDILISTGESETFLQKAIQEQGRGRVLDTINEIQERHDAVKDMEKNLKELHQVFMDMAVLVQAQGEHLDDIESQVARAHSFVRGGTQELHTARVYQKNTRKWVIISIVASVIIIIVLVLIIVKPGSNSGNSSSP 304
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59493476 59494848 - Bda022293.1 Bda05g01127 7439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01127 304 SUPERFAMILY t-snare proteins 29 255 IPR010989 GO:0016020|GO:0016192
Bda05g01127 304 CDD SynN 30 187 IPR006011 GO:0016020
Bda05g01127 304 CDD SNARE_syntaxin1-like 199 259 - -
Bda05g01127 304 Gene3D - 28 160 - -
Bda05g01127 304 Gene3D - 195 293 - -
Bda05g01127 304 PANTHER SYNTAXIN 8 292 IPR045242 -
Bda05g01127 304 SMART tSNARE_6 195 262 IPR000727 -
Bda05g01127 304 Coils Coil 125 149 - -
Bda05g01127 304 MobiDBLite consensus disorder prediction 1 23 - -
Bda05g01127 304 Coils Coil 200 220 - -
Bda05g01127 304 ProSitePatterns Syntaxin / epimorphin family signature. 206 245 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bda05g01127 304 Pfam SNARE domain 238 288 IPR000727 -
Bda05g01127 304 Pfam Syntaxin 32 235 IPR006011 GO:0016020
Bda05g01127 304 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 200 262 IPR000727 -
Bda05g01127 304 Coils Coil 30 57 - -
Bda05g01127 304 PANTHER BNAA05G27280D PROTEIN 8 292 - -
Bda05g01127 304 SMART SynN_4 25 151 IPR006011 GO:0016020
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda02g00552 Bda-Chr2:46377171 Bda05g01127 Bda-Chr5:59493476 4.62E-44 dispersed
Bda03g00659 Bda-Chr3:5600504 Bda05g01127 Bda-Chr5:59493476 8.79E-93 dispersed
Bda05g01127 Bda-Chr5:59493476 Bda09g01276 Bda-Chr9:44512231 7.02E-123 dispersed
Bda01g00422 Bda-Chr1:30755288 Bda05g01127 Bda-Chr5:59493476 2.68E-146 wgd
Bda03g00658 Bda-Chr3:5593717 Bda05g01127 Bda-Chr5:59493476 5.97E-148 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01127 K08486 - csv:101208931 456.062