Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g01129 | ATGGCAGATGTCGACGTTCCTCCTTACTTTCTCTGCCCGATTTCTCTGGAGATCATGAAAGATCCGGTCACTGTTTCGTCGGGGATAACCTACGATCGTCAAAGCATAGAGAAATGGTTGTATTCAAATAGAAACGATTTTTGTCCTGTTTCGAAACAACTCCTCTCCGGCTCCGATCTCACTCCGAACCATACTCTCCGGCGACTTATTCAAGCGTGGTGCACCGTCAACGCCTCCAACAACGTCGAGAGAATTCCGACGCCGAAACCTCCTGTTAGCAAGACTCAGGTCGTCAAGATTCTCAATGATGCGAAATCACCTCTTTCTCAGCTAAAATGTCTGAAAAATCTCAGATCCATTGCCGCCGAGAGCGCGAGTAATAAACGTTGCATCGAATCTGCCGGAGCGGTCGAGTTTTTAGCTTCAATAGTAATTTCCTCCGTTTCCTACTCTCCGGAAGAAGATTCCGGCATGGGTTTAGATCGCACGAGAGCGTGTGAAGAGGCTTTGAGTACTCTACATAATCTCCAAATCTCTGAAGCCGGGATGAAATCTCTCGGCGGAAAAAATGGCGAATTCATCGAAGCCCTAGTCAAAGTAATGCAACGAGGGAGCCTACGATTCACGAGCCTATTCAACCATGTTGTTGAAATCAATACTCGAACTCACCGATCCGACAAAACTAAGTGA | 690 | 46.96 | MADVDVPPYFLCPISLEIMKDPVTVSSGITYDRQSIEKWLYSNRNDFCPVSKQLLSGSDLTPNHTLRRLIQAWCTVNASNNVERIPTPKPPVSKTQVVKILNDAKSPLSQLKCLKNLRSIAAESASNKRCIESAGAVEFLASIVISSVSYSPEEDSGMGLDRTRACEEALSTLHNLQISEAGMKSLGGKNGEFIEALVKVMQRGSLRFTSLFNHVVEINTRTHRSDKTK | 229 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 59508493 | 59509182 | - | Bda022295.1 | Bda05g01129 | 7441 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g01129 | 229 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PUB23 | 1 | 206 | - | - | |
| Bda05g01129 | 229 | SMART | Ubox_2 | 9 | 73 | IPR003613 | GO:0004842|GO:0016567 | |
| Bda05g01129 | 229 | Gene3D | - | 93 | 216 | IPR011989 | - | |
| Bda05g01129 | 229 | ProSiteProfiles | U-box domain profile. | 5 | 80 | IPR003613 | GO:0004842|GO:0016567 | |
| Bda05g01129 | 229 | PANTHER | WDSAM1 PROTEIN | 1 | 206 | IPR045185 | GO:0061630 | |
| Bda05g01129 | 229 | SUPERFAMILY | RING/U-box | 4 | 77 | - | - | |
| Bda05g01129 | 229 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1 | 85 | IPR013083 | - | |
| Bda05g01129 | 229 | CDD | RING-Ubox_PUB | 10 | 53 | IPR045210 | - | |
| Bda05g01129 | 229 | Pfam | U-box domain | 6 | 76 | IPR003613 | GO:0004842|GO:0016567 |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda03g01627 | Bda05g01129 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g01129 | Bda-Chr5:59508493 | Bda15g00567 | Bda-Chr15:8833776 | 1.82E-47 | dispersed | |
| Bda05g00836 | Bda-Chr5:56921583 | Bda05g01129 | Bda-Chr5:59508493 | 4.49E-09 | transposed | |
| Bda02g00678 | Bda-Chr2:47760594 | Bda05g01129 | Bda-Chr5:59508493 | 1.03E-65 | wgd | |
| Bda03g01627 | Bda-Chr3:55631798 | Bda05g01129 | Bda-Chr5:59508493 | 7.11E-119 | wgd | |
| Bda05g01129 | Bda-Chr5:59508493 | Bda09g01390 | Bda-Chr9:45807203 | 2.00E-40 | wgd | |
| Bda05g01129 | Bda-Chr5:59508493 | Bda09g00271 | Bda-Chr9:3361028 | 3.18E-47 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g01129 | - | - | vvi:100250551 | 285.419 |