Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01144 ATGGAAAACCAACCTTATTCTCAACAATTCAACCCTCAGATCTATACCCACCAGAACCAGCCTTGGCTGCTTAGTAATTTCAACCTCAACAGAGAAAACAACGTCGAAGATGACGAAATCGACGACCTAACCAGAACAGAAGATGGAGAAGAAGGCGGCGCCGCCGCTAGTCGAGATGAGTGGGAGGAAACAGCGGATAAACAATCCATGTTTGAAAAGGCATTAACGCCCAGTGATGTCGGAAAACTGAACCGGCTCGTCATTCCGAAACAACACGCCGAGAAATACTTCCCGCTCGGAGATGGCGGAGACTCCGCCGACAAGGGTTTGCTTCTGAGCTTCGAGGATGAGGCCGGAAAATCGTGGAGGTTCCGTTACTCTTACTGGAATAGTAGCCAAAGCTACGTTCTTACCAAGGGGTGGAGCCGGTATGTTAAAGAGAAGAGGCTAGCATCTGGTGACGTCGTTTTCTTTCAGCGACATCGGACGAACGGCGAGCGGTTGTTCATAGGGTGGAGGCGGCGGCCGGCGCAGCGTAGCAGCAGTGCAGTGATGGCGCAGGAAGGTAATGGTAATAGTAATCAAGGGAGTGGGGGGTGGACCAGATTCTTCTATTCTGCGCATCCTTATCCCGAACACAGCCATCATCCTGATCATCAGCTTCGTCTCCATCATTATCATCCAGCGCCATACCAACCTGATTGTCTTCATGCTGGGTCAGTCTCCGGCCACACCCCAACGGCTTCAGTCGGAAACTCGAAGATACTGAGACTTTTTGGTGTAAACATGGAGTGCCAAACCGACGTCTCCGACGACCCATCTACGCCTTCTCCTTCTCTTCTAACCAAATCGGCGACACCCAATCACCAGTTCTTCCCGCAGTATATTTCTTCAAATCCTGCTAATCATACGGTATGA 918 50.76 MENQPYSQQFNPQIYTHQNQPWLLSNFNLNRENNVEDDEIDDLTRTEDGEEGGAAASRDEWEETADKQSMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGDGGDSADKGLLLSFEDEAGKSWRFRYSYWNSSQSYVLTKGWSRYVKEKRLASGDVVFFQRHRTNGERLFIGWRRRPAQRSSSAVMAQEGNGNSNQGSGGWTRFFYSAHPYPEHSHHPDHQLRLHHYHPAPYQPDCLHAGSVSGHTPTASVGNSKILRLFGVNMECQTDVSDDPSTPSPSLLTKSATPNHQFFPQYISSNPANHTV 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59629321 59630543 + Bda022311.1 Bda05g01144 7456

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01144 305 ProSiteProfiles B3 DNA-binding domain profile. 71 175 IPR003340 GO:0003677
Bda05g01144 305 CDD B3_DNA 70 166 IPR003340 GO:0003677
Bda05g01144 305 Pfam B3 DNA binding domain 71 175 IPR003340 GO:0003677
Bda05g01144 305 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 21 279 IPR044800 GO:0003700
Bda05g01144 305 MobiDBLite consensus disorder prediction 47 63 - -
Bda05g01144 305 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0156000 21 279 - -
Bda05g01144 305 Gene3D - 64 185 IPR015300 -
Bda05g01144 305 SUPERFAMILY DNA-binding pseudobarrel domain 67 175 IPR015300 -
Bda05g01144 305 SMART B3_2 71 176 IPR003340 GO:0003677
Bda05g01144 305 MobiDBLite consensus disorder prediction 267 286 - -
Bda05g01144 305 MobiDBLite consensus disorder prediction 38 63 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01144 - - - zju:107415017 313.538
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Bda03g01650 Bda05g01144 BCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01144 Bda-Chr5:59629321 Bda07g00161 Bda-Chr7:1999022 2.74E-47 dispersed
Bda12g00689 Bda-Chr12:33397373 Bda05g01144 Bda-Chr5:59629321 5.86E-11 dispersed
Bda09g00108 Bda-Chr9:1959470 Bda05g01144 Bda-Chr5:59629321 8.79E-16 transposed
Bda03g01650 Bda-Chr3:55852070 Bda05g01144 Bda-Chr5:59629321 2.83E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g941 . . . . Bpe04g01510 . Bma04g01562 Bma10g00112 . Cmo14g00327 . . . . . . . . . . . . . . . . . . . . . . . Cone13ag1158 Cone19ag1137 . . . Cme04g02367 . Blo09g00482 Bda03g01650 Bda05g01144 . . . . . . . . Cma14g00333 . Car14g00304 Cpe03g00288 . Bhi11g02352 . . . . . . Cla10g01776 Cam10g1832 Cec10g1886 Cco10g1857 Clacu10g1846 Cmu10g2596 Cre10g1985 Lsi03g01863 Csa03g03451 Chy04g01900 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g01650 BCT 66 182 RAV Transcription Factor Family AT2G36080 76.3 2.8e-49 191.8
Bda05g01144 BCT 66 182 RAV Transcription Factor Family AT2G36080 74.6 2.0e-47 185.7
Bda07g00161 . 86 198 RAV Transcription Factor Family AT2G36080 69.0 1.6e-41 166.0
Bda03g01027 BCT,CCT,ECH 47 169 RAV Transcription Factor Family AT2G36080 64.3 8.0e-41 163.7
Bda01g02092 CCT,ECH 179 288 RAV Transcription Factor Family AT2G36080 64.0 5.4e-37 151.0
Bda03g01027 BCT,CCT,ECH 21 277 RAV Transcription Factor Family AT2G46870 51.3 1.8e-59 226.5
Bda07g00161 . 86 218 RAV Transcription Factor Family AT2G46870 75.4 1.3e-54 210.3
Bda08g00078 BCT,CCT,ECH 1 221 RAV Transcription Factor Family AT2G46870 52.3 5.1e-54 208.4
Bda05g01144 BCT 43 176 RAV Transcription Factor Family AT2G46870 64.2 2.4e-43 172.9
Bda03g01650 BCT 63 176 RAV Transcription Factor Family AT2G46870 70.1 3.4e-42 169.1
Bda07g01526 CCT,ECH 186 298 RAV Transcription Factor Family AT2G46870 64.7 3.9e-38 155.6
Bda10g01143 . 191 299 RAV Transcription Factor Family AT2G46870 67.0 3.3e-37 152.5
Bda03g01650 BCT 67 208 RAV Transcription Factor Family AT3G11580 63.4 5.3e-48 188.0
Bda05g01144 BCT 65 216 RAV Transcription Factor Family AT3G11580 59.4 7.6e-47 184.1
Bda03g01027 BCT,CCT,ECH 46 164 RAV Transcription Factor Family AT3G11580 61.5 6.3e-41 164.5
Bda07g00161 . 86 212 RAV Transcription Factor Family AT3G11580 58.3 2.0e-39 159.5
Bda03g01027 BCT,CCT,ECH 47 277 RAV Transcription Factor Family AT3G61970 50.8 4.2e-53 205.3
Bda07g00161 . 85 227 RAV Transcription Factor Family AT3G61970 69.9 4.6e-52 201.8
Bda11g00402 CCT,ECH 56 176 RAV Transcription Factor Family AT3G61970 63.7 1.5e-39 160.2
Bda07g01526 CCT,ECH 188 298 RAV Transcription Factor Family AT3G61970 66.4 1.7e-38 156.8
Bda10g01143 . 187 299 RAV Transcription Factor Family AT3G61970 66.1 8.4e-38 154.5
Bda01g02092 CCT,ECH 177 292 RAV Transcription Factor Family AT3G61970 64.1 8.4e-38 154.5
Bda07g00161 . 61 197 RAV Transcription Factor Family AT4G01500 59.0 1.4e-41 167.2
Bda05g01144 BCT 61 271 RAV Transcription Factor Family AT5G06250 55.9 7.5e-54 207.6
Bda03g01650 BCT 61 262 RAV Transcription Factor Family AT5G06250 54.0 2.8e-53 205.7
Bda03g01027 BCT,CCT,ECH 48 156 RAV Transcription Factor Family AT5G06250 66.4 1.2e-40 163.7
Bda07g00161 . 87 195 RAV Transcription Factor Family AT5G06250 66.4 2.8e-40 162.5
Bda07g00726 . 41 271 RAV Transcription Factor Family AT1G51120 57.7 1.0e-74 277.3
Bda10g01143 . 1 370 RAV Transcription Factor Family AT1G13260 61.2 1.1e-110 396.7
Bda07g01526 CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 61.2 1.2e-107 386.7
Bda01g02092 CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 61.6 9.2e-105 377.1
Bda07g00161 . 88 195 RAV Transcription Factor Family AT1G13260 72.5 1.1e-38 157.5
Bda03g01650 BCT 68 179 RAV Transcription Factor Family AT1G13260 68.8 1.5e-38 157.1
Bda03g01027 BCT,CCT,ECH 44 169 RAV Transcription Factor Family AT1G13260 62.2 2.5e-38 156.4
Bda05g01144 BCT 68 175 RAV Transcription Factor Family AT1G13260 68.5 2.8e-37 152.9
Bda10g01143 . 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.2e-101 366.7
Bda01g02092 CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 65.6 7.3e-99 357.5
Bda07g01526 CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 62.6 8.1e-98 354.0
Bda05g01144 BCT 38 175 RAV Transcription Factor Family AT3G25730 54.5 6.1e-37 151.8
Bda07g01526 CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 62.5 2.0e-115 412.5
Bda10g01143 . 1 371 RAV Transcription Factor Family AT1G68840 59.9 9.7e-110 393.7
Bda01g02092 CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 58.3 2.2e-101 365.9
Bda03g01027 BCT,CCT,ECH 11 167 RAV Transcription Factor Family AT1G68840 50.6 1.4e-39 160.6
Bda07g00161 . 87 200 RAV Transcription Factor Family AT1G68840 68.1 5.3e-39 158.7
Bda03g01650 BCT 67 175 RAV Transcription Factor Family AT1G68840 68.8 3.4e-38 156.0
Bda05g01144 BCT 43 181 RAV Transcription Factor Family AT1G68840 54.7 5.8e-38 155.2
Bda10g01143 . 26 325 RAV Transcription Factor Family AT3G25730 65.8 1.2e-101 366.7
Bda01g02092 CCT,ECH 4 303 RAV Transcription Factor Family AT3G25730 65.6 7.3e-99 357.5
Bda07g01526 CCT,ECH 4 324 RAV Transcription Factor Family AT3G25730 62.6 8.1e-98 354.0
Bda05g01144 BCT 38 175 RAV Transcription Factor Family AT3G25730 54.5 6.1e-37 151.8
Bda07g00726 . 41 271 RAV Transcription Factor Family AT1G51120 57.7 1.0e-74 277.3
Bda03g01650 BCT 67 208 RAV Transcription Factor Family AT3G11580 63.4 5.3e-48 188.0
Bda05g01144 BCT 65 216 RAV Transcription Factor Family AT3G11580 59.4 7.6e-47 184.1
Bda03g01027 BCT,CCT,ECH 46 164 RAV Transcription Factor Family AT3G11580 61.5 6.3e-41 164.5
Bda07g00161 . 86 212 RAV Transcription Factor Family AT3G11580 58.3 2.0e-39 159.5
Bda07g00161 . 61 197 RAV Transcription Factor Family AT4G01500 59.0 1.4e-41 167.2
Bda03g01650 BCT 66 182 RAV Transcription Factor Family AT2G36080 76.3 2.8e-49 191.8
Bda05g01144 BCT 66 182 RAV Transcription Factor Family AT2G36080 74.6 2.0e-47 185.7
Bda07g00161 . 86 198 RAV Transcription Factor Family AT2G36080 69.0 1.6e-41 166.0
Bda03g01027 BCT,CCT,ECH 47 169 RAV Transcription Factor Family AT2G36080 64.3 8.0e-41 163.7
Bda01g02092 CCT,ECH 179 288 RAV Transcription Factor Family AT2G36080 64.0 5.4e-37 151.0
Bda05g01144 BCT 61 271 RAV Transcription Factor Family AT5G06250 55.9 7.5e-54 207.6
Bda03g01650 BCT 61 262 RAV Transcription Factor Family AT5G06250 54.0 2.8e-53 205.7
Bda03g01027 BCT,CCT,ECH 48 156 RAV Transcription Factor Family AT5G06250 66.4 1.2e-40 163.7
Bda07g00161 . 87 195 RAV Transcription Factor Family AT5G06250 66.4 2.8e-40 162.5
Bda03g01027 BCT,CCT,ECH 21 277 RAV Transcription Factor Family AT2G46870 51.3 1.8e-59 226.5
Bda07g00161 . 86 218 RAV Transcription Factor Family AT2G46870 75.4 1.3e-54 210.3
Bda08g00078 BCT,CCT,ECH 1 221 RAV Transcription Factor Family AT2G46870 52.3 5.1e-54 208.4
Bda05g01144 BCT 43 176 RAV Transcription Factor Family AT2G46870 64.2 2.4e-43 172.9
Bda03g01650 BCT 63 176 RAV Transcription Factor Family AT2G46870 70.1 3.4e-42 169.1
Bda07g01526 CCT,ECH 186 298 RAV Transcription Factor Family AT2G46870 64.7 3.9e-38 155.6
Bda10g01143 . 191 299 RAV Transcription Factor Family AT2G46870 67.0 3.3e-37 152.5
Bda03g01027 BCT,CCT,ECH 47 277 RAV Transcription Factor Family AT3G61970 50.8 4.2e-53 205.3
Bda07g00161 . 85 227 RAV Transcription Factor Family AT3G61970 69.9 4.6e-52 201.8
Bda11g00402 CCT,ECH 56 176 RAV Transcription Factor Family AT3G61970 63.7 1.5e-39 160.2
Bda07g01526 CCT,ECH 188 298 RAV Transcription Factor Family AT3G61970 66.4 1.7e-38 156.8
Bda10g01143 . 187 299 RAV Transcription Factor Family AT3G61970 66.1 8.4e-38 154.5
Bda01g02092 CCT,ECH 177 292 RAV Transcription Factor Family AT3G61970 64.1 8.4e-38 154.5
Bda10g01143 . 1 370 RAV Transcription Factor Family AT1G13260 61.2 1.1e-110 396.7
Bda07g01526 CCT,ECH 1 369 RAV Transcription Factor Family AT1G13260 61.2 1.2e-107 386.7
Bda01g02092 CCT,ECH 1 340 RAV Transcription Factor Family AT1G13260 61.6 9.2e-105 377.1
Bda07g00161 . 88 195 RAV Transcription Factor Family AT1G13260 72.5 1.1e-38 157.5
Bda03g01650 BCT 68 179 RAV Transcription Factor Family AT1G13260 68.8 1.5e-38 157.1
Bda03g01027 BCT,CCT,ECH 44 169 RAV Transcription Factor Family AT1G13260 62.2 2.5e-38 156.4
Bda05g01144 BCT 68 175 RAV Transcription Factor Family AT1G13260 68.5 2.8e-37 152.9
Bda07g01526 CCT,ECH 1 370 RAV Transcription Factor Family AT1G68840 62.5 2.0e-115 412.5
Bda10g01143 . 1 371 RAV Transcription Factor Family AT1G68840 59.9 9.7e-110 393.7
Bda01g02092 CCT,ECH 1 343 RAV Transcription Factor Family AT1G68840 58.3 2.2e-101 365.9
Bda03g01027 BCT,CCT,ECH 11 167 RAV Transcription Factor Family AT1G68840 50.6 1.4e-39 160.6
Bda07g00161 . 87 200 RAV Transcription Factor Family AT1G68840 68.1 5.3e-39 158.7
Bda03g01650 BCT 67 175 RAV Transcription Factor Family AT1G68840 68.8 3.4e-38 156.0
Bda05g01144 BCT 43 181 RAV Transcription Factor Family AT1G68840 54.7 5.8e-38 155.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006170 2 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15951 PF02362 B3 4.80E-30 CL0405 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g01144 Bda_Chr05 FPKM 0.537648 0.506055 3.420884 2.938531 0.652848 0.0 0.279022 2.564826 2.786475