Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g01146 | ATGAAGAACGGCGATTCAACCACGATTGAGATTCAAGAGACGAGCGGCAGCGCCAAAAAGAAGGCGGTTTTGGGGGCTGCGCCGCCCAGACATGGTGGTTTGAAGAGAGGATTCGCCGTATTCGACTTGGTTTTAAGGATCGGAGCTATGGTTGCTGCTTTAGCTTCTGCTGCAGCTATGGGAACTAGTGATCAAACTCTACCTTTTTTCACACAGTTCTTCCAATTCCAAGCTAGCTATGATGATTTGCCCACTTTCCAGTTTTTTGTGATCGCCATGGGAATAGTTGCAGGCTACTTAGCTCTCTCCATCCCCTTCTCCATCGTTTGTATCATTCGACCTCATGCAACCGGACCCAGATTACTCCTACTTATTTTAGACACAGTGGCTCTTACTCTAGCCACATCGGCAGCCGCCGCAGCAGCTGCCATCGTCTACTTAGCTCATAACGGAAACTCCAACGCAAACTGGCTGGCCATCTGCAACCAGTTCGGCGATTTTTGCCAGAAAGTTAGCGGGGCGGTGGTCGGTGCTTTCATCGCCGTAGTTATCATCATCTTCCTCGTTTTGTTCTCCGCATTGTCTCTCCGAAGGCACTGA | 600 | 49.83 | MKNGDSTTIEIQETSGSAKKKAVLGAAPPRHGGLKRGFAVFDLVLRIGAMVAALASAAAMGTSDQTLPFFTQFFQFQASYDDLPTFQFFVIAMGIVAGYLALSIPFSIVCIIRPHATGPRLLLLILDTVALTLATSAAAAAAAIVYLAHNGNSNANWLAICNQFGDFCQKVSGAVVGAFIAVVIIIFLVLFSALSLRRH | 199 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 59642321 | 59643155 | - | Bda022313.1 | Bda05g01146 | 7458 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g01146 | 199 | TIGRFAM | A_tha_TIGR01569: plant integral membrane protein TIGR01569 | 43 | 195 | IPR006459 | - | |
| Bda05g01146 | 199 | PANTHER | NITRATE, FORMATE, IRON DEHYDROGENASE | 15 | 199 | - | - | |
| Bda05g01146 | 199 | Pfam | Casparian strip membrane protein domain | 36 | 183 | IPR006702 | - | |
| Bda05g01146 | 199 | PANTHER | CASP-LIKE PROTEIN | 15 | 199 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Bda01g00355 | Bda05g01146 | CCT | |
| Bda03g00715 | Bda05g01146 | CCT | |
| Bda01g00355 | Bda05g01146 | ECH | |
| Bda03g00715 | Bda05g01146 | ECH | |
| Bda03g01654 | Bda05g01146 | BCT |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda05g01146 | Bda-Chr5:59642321 | Bda12g00166 | Bda-Chr12:1580130 | 6.76E-54 | dispersed | |
| Bda12g00779 | Bda-Chr12:36509805 | Bda05g01146 | Bda-Chr5:59642321 | 7.74E-11 | transposed | |
| Bda01g00355 | Bda-Chr1:29328096 | Bda05g01146 | Bda-Chr5:59642321 | 6.87E-43 | wgd | |
| Bda03g01654 | Bda-Chr3:55870139 | Bda05g01146 | Bda-Chr5:59642321 | 1.18E-96 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g01146 | - | - | jre:109002137 | 224.557 |