Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01197 ATGGAGGCTTGTCATTGTACGCCGACCCATCTTCACCTCCTTCCCTCTAAACGTTTTGTTTCTCGTCGGTTCTCCTTTAATGGAGCAGAGGTGTCCACTGCATTCATTTCCGCCGCCTCATCTCGTAAAACCATCCCGTCCATCTCCGCAACCATCTCCAAGTCGGCGGAAGAAATCTCTGCCAAGTCCTCCGCCGCCACCTCCGTCCCTAAACATGAAGATCCGTCATCAACGTCTCACTCTCGTCCCAAAGTATCCCCGGATTCGCTGCAGTTCGAAGCTGGTTTTTTAGGGGCTGTTCCAGACCGTACGTCTGGTGGGGGAACTGATAAGGATCTCAATGCCATGGAATATCTTACTAATATTCTGTCTTCGAAGGTCTACGACGTTGCCATTGAATCCCCGTTGCAGCTCGCCCCAAAGCTCTCCGAGCGGTTGGGTGTTAAATTGTGGCTCAAGAGGGAGGATTTACAACCTGTGTTCTCATTCAAGCTTCGTGGAGCTTATAATATGATGGCAAAACTTCCCAAAGAACAATTAGAAAGAGGAGTTATCTGCTCGTCAGCTGGAAATCATGCGCAAGGAGTTGCTTTGGCCGCCAAGAAACTTGGCTGTGTTGCCGTGATTGCTATGCCAGTCACTACCCCTGAAATTAAGTGGCAATCTGTGGAGAAGTTAGGAGCAACTGTTGTTCTTATTGGAGACTCCTACGATGAGGCACAAGCTTATGCTCGAAAACGTGGTAAAGAGGAAGGTCGGACATTTATACCTCCTTTTGATCATCCAGATGTTATAACTGGGCAGGGAACGGTAGGGATGGAAATCTTGCATCAAATGCGTGGACCTCTTCATGCAATATTTGTGCCTGTGGGAGGTGGTGGACTAATAGCAGGCATTGCTGCATATATGAAGAGAGTTTCTCCCGAGGTGAAGATTATTGGAGTAGAGCCCGCTGATGCAAATGCAATGGCACTGTCATTACATCATGGCAAGAGGGTGATGTTGGACCAGGTTGGAGGTTTTGCTGATGGTGTAGCAGTTAAAGAGGTTGGCGAAGAAACATTTCGTTTATGCAAAGATTTGGTGGATGGTGTTGTTCTAGTTAGCCGTGATGCTATCTGTGCCTCAATTAAGGACATGTTTGAGGAGAAAAGGAGCATCTTAGAACCTGCAGGTGCTCTTTCGCTCGCTGGAGCTGAAGCATACTGCAAATATTATGGGCTGAAGGGAGAAAATGTTGTAGCAATTACAAGTGGTGCAAATATGAACTTTGATAAACTGAGGGTTGTGACAGAGCTTGCAAATGTTGGTCGCCAACAAGAGGCCGTGCTTGCAACTACCATGCCGGAGGAGCCTGGGAGCTTCAAACGATTTTGTGAACTGGTAGGTCCTATGAATATCACTGAATTCAAATACCGATGCAACTCTGACAAAAAGGCCGTCATGAAATTGTTTCTCCATTCAAACAGTGTTGGCATTCATACAGCTTCTGAATTGGAGGCAATGAAGCAGCGGATGGAATCTTCTCGACTTAAAACTTACAATCTCACCGGAAGTGACTTGGTTAAAGATCATTTACGTTATTTGATGGGAGGTAGATCAAATGTTGAAAATGAAGTTCTTTGTCGCTTTGTCTTTCCTGAGCGGCCAGGTGCTTTAATGAAGTTCTTGGACTCTTTCAGCCCACGCTGGAATATTAGCTTGTTCCATTACCGTGGACAGGGTGAGACTGGTGCAAATGTATTGGTTGGAATTCAGGTCCCATCCTCTGAGATGAATGAATTCCACTTTCGGGCCAACGGTCTCAGATATGATTATGCGGTCGTAACTGATGACATTAACTTCCAGCTTTTGATGCATGATGATTTGCACCAGTTTGTGCCAAATCTTCTGCAGAATGGAAGTTGCTGA 1911 46.15 MEACHCTPTHLHLLPSKRFVSRRFSFNGAEVSTAFISAASSRKTIPSISATISKSAEEISAKSSAATSVPKHEDPSSTSHSRPKVSPDSLQFEAGFLGAVPDRTSGGGTDKDLNAMEYLTNILSSKVYDVAIESPLQLAPKLSERLGVKLWLKREDLQPVFSFKLRGAYNMMAKLPKEQLERGVICSSAGNHAQGVALAAKKLGCVAVIAMPVTTPEIKWQSVEKLGATVVLIGDSYDEAQAYARKRGKEEGRTFIPPFDHPDVITGQGTVGMEILHQMRGPLHAIFVPVGGGGLIAGIAAYMKRVSPEVKIIGVEPADANAMALSLHHGKRVMLDQVGGFADGVAVKEVGEETFRLCKDLVDGVVLVSRDAICASIKDMFEEKRSILEPAGALSLAGAEAYCKYYGLKGENVVAITSGANMNFDKLRVVTELANVGRQQEAVLATTMPEEPGSFKRFCELVGPMNITEFKYRCNSDKKAVMKLFLHSNSVGIHTASELEAMKQRMESSRLKTYNLTGSDLVKDHLRYLMGGRSNVENEVLCRFVFPERPGALMKFLDSFSPRWNISLFHYRGQGETGANVLVGIQVPSSEMNEFHFRANGLRYDYAVVTDDINFQLLMHDDLHQFVPNLLQNGSC 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59985079 59988644 - Bda022367.1 Bda05g01197 7509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01197 636 Pfam C-terminal regulatory domain of Threonine dehydratase 532 616 IPR001721 -
Bda05g01197 636 Pfam C-terminal regulatory domain of Threonine dehydratase 432 526 IPR001721 -
Bda05g01197 636 Pfam Pyridoxal-phosphate dependent enzyme 130 419 IPR001926 -
Bda05g01197 636 CDD ACT_ThrD-I_2 539 619 - -
Bda05g01197 636 PANTHER THREONINE DEHYDRATASE, MITOCHONDRIAL-RELATED 58 619 - -
Bda05g01197 636 SUPERFAMILY ACT-like 527 618 IPR045865 -
Bda05g01197 636 MobiDBLite consensus disorder prediction 61 88 - -
Bda05g01197 636 Gene3D - 167 258 IPR036052 -
Bda05g01197 636 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 113 469 IPR036052 -
Bda05g01197 636 CDD Thr-dehyd 119 423 - -
Bda05g01197 636 CDD ACT_ThrD-I_1 441 529 - -
Bda05g01197 636 Gene3D - 135 413 IPR036052 -
Bda05g01197 636 ProSiteProfiles ACT-like domain profile. 442 518 IPR001721 -
Bda05g01197 636 MobiDBLite consensus disorder prediction 61 86 - -
Bda05g01197 636 TIGRFAM ilvA_2Cterm: threonine ammonia-lyase, biosynthetic 117 618 IPR005787 GO:0004794|GO:0009097
Bda05g01197 636 Gene3D Biosynthetic Threonine Deaminase; Domain 3 441 620 IPR038110 -
Bda05g01197 636 ProSiteProfiles ACT-like domain profile. 540 611 IPR001721 -
Bda05g01197 636 PANTHER THREONINE DEHYDRATASE 58 619 - -
Bda05g01197 636 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 155 168 IPR000634 GO:0006520|GO:0030170
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda01g00374 Bda05g01197 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda01g00360 Bda-Chr1:29433128 Bda05g01197 Bda-Chr5:59985079 0 dispersed
Bda01g00374 Bda-Chr1:29596748 Bda05g01197 Bda-Chr5:59985079 0 dispersed
Bda05g01197 Bda-Chr5:59985079 Bda13g00830 Bda-Chr13:9832705 5.88E-149 dispersed
Bda05g01197 Bda-Chr5:59985079 Bda07g00659 Bda-Chr7:7905778 1.11E-95 wgd
Bda05g01197 Bda-Chr5:59985079 Bda09g00230 Bda-Chr9:3085712 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01197 K01754 - cpap:110822872 921.768