Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01200 ATGGAGGTCGCTCCCATGGCGTCCCCCGCCCTTACTTCGCTTTACGTCGGTGACCTTCATCCCGACGTTACGGACGACCTTCTTCATGACGCTTTCTCCCAATTCGACAGCCTCAACTCGGTTCGTGTCTGCAGGGACTCCACCACTGGGCGTCCCCTCTGTTACGGTTATGTCAATTTTACCTCTCCTCAAGACGCAATCGACGCTATTGCGGAAAAGAACCACTGTTTTCTGAATGGGAAAATGATAAGAGTCATGCATTTGCATCGTGATTCTGATGCAAGGAAAAGTGGAATTGGCAACGTGTTTGTCAAGGTATTATCAAGCTTTCCTAACACTTTTATATGTTCTAAGGAGCAACCCTTGATGTCAATTTTATGGCAGAACTTGAGTGATTCGATCAGTAATGCCGGGCTCGAAGAGATATTTAAGAGTTTTGGTACTATTGTCTCCTGCAAAGTTTCCATGACTGACGATGGGAAGAGTAGATGTTATGGTTTTGTTCAATTTGAGTCTGAAGATTCTGCAATTGCTGCTGTTGAGAACTTACATGGCTTAACCATAGATGGGAAGCAGATCTACGTCGGGAAGTTTATTAAGAAGAGCGATCGACTCATGGCCAACAACGATACTAAATATACAAATTTGTATATGAAGAATTTGGATCCTGAAATTGGGGAGGACCTTCTGCATAAAAAGTTCTCGGAGTTTGGAAAAATCGCTAGCTTGGTGATCGCAAAGGACGAGAACGGAATATCTAAAGGTTTCGGCTTTGTAAACTTTGATAATTACGAAGATGCCAAACGTGCTATGGAAGAGATGAACGGATCACAAGTTGGCTCAAAGGTTCTCTACGTAGCAAGGGCGCAGAAGAAGATAGAACGCGAAGAAATGTTGCGTAGAGAGTTCGAGGAAAAGCGCAAGGACCTACTAGTGAAATCCAAGGGCTTAAATGTGTATGTAAAGAATATAAACGATGATGTCACGGACGAGGAATTTAGAGAACATTTCAGTCAGTGTGGCACGATTACTTCTGCGAGAATTATGCGGAACGGCAAAGGAATAAGCAAAGGGTTTGGGTTTATTTGCTTCTCTTCTGAGGAGGAGGCAAATGAAGCTGTGAACACCTTTTATGGCCATATGTTTCATGGCAAGCCATTATATGTGGCTATTGCTCAAAGGAAAGAGGAAAGACAAACACAACTGCAGATTCATTTCGCTCAGCGGATGGCCGGACTAGTTCCGGCTGCATATCCTCCTTTCTTTTTCACGGCTACTCCCGGTGCTGTTCCGGTTTCGCCATTGCCACAGAGACCTATCCTGATTGATCAACCCTTGGGATTAGGCCCCGGATGGAGGGCCACTACCTTTGCTTCGCCAATTGGACCGCCCGGCTATCAACTACCTGCCCCTATTATTGCTAATCCTCCCAGACAGGCTAGGCATAACAGGGGAAGGTTGAATGAGCAATTTCTATCTTTGAATAATGCTCATGCTGGTTTATATAGACAATACTTCCACCAACCCAATCAATCTCTATATTATTCTAACGATTCAGCCAATCAGCAGGTTCATCTGGCACAGGCTGGACAGTTCATGTATGTACCAAAGTCGCGTACAGACGAGCTTGCTGGTTCCGAAAAAGGTAGTTTCGAGTCAGAGAGCTCACAGATACTAAGCATAGAGCTGTCTGCTGCTTCTCCCGAGCAGCAGAAACAAATACTCGGTGAACGTCTCCGTCCACTCGTCGAAAAATATAAGCCGGAGCTTGCAGCGAAAATAACAGGAATGCTTTTGGAGTTGGACAGCTCCGAATTGCTACACTTACTGGATTCGCCTGAGTCTCTGGCTGCCAAAGTGGAGGAAGCAGTCCAAGTTCTGAAGATTTCTAAGAGCAACGTCTCGAGCCCAGACTCTCTTCATTCCAGTTTTTTATCAGCTGAGGTTGCAGTCAGTTGA 1959 45.28 MEVAPMASPALTSLYVGDLHPDVTDDLLHDAFSQFDSLNSVRVCRDSTTGRPLCYGYVNFTSPQDAIDAIAEKNHCFLNGKMIRVMHLHRDSDARKSGIGNVFVKVLSSFPNTFICSKEQPLMSILWQNLSDSISNAGLEEIFKSFGTIVSCKVSMTDDGKSRCYGFVQFESEDSAIAAVENLHGLTIDGKQIYVGKFIKKSDRLMANNDTKYTNLYMKNLDPEIGEDLLHKKFSEFGKIASLVIAKDENGISKGFGFVNFDNYEDAKRAMEEMNGSQVGSKVLYVARAQKKIEREEMLRREFEEKRKDLLVKSKGLNVYVKNINDDVTDEEFREHFSQCGTITSARIMRNGKGISKGFGFICFSSEEEANEAVNTFYGHMFHGKPLYVAIAQRKEERQTQLQIHFAQRMAGLVPAAYPPFFFTATPGAVPVSPLPQRPILIDQPLGLGPGWRATTFASPIGPPGYQLPAPIIANPPRQARHNRGRLNEQFLSLNNAHAGLYRQYFHQPNQSLYYSNDSANQQVHLAQAGQFMYVPKSRTDELAGSEKGSFESESSQILSIELSAASPEQQKQILGERLRPLVEKYKPELAAKITGMLLELDSSELLHLLDSPESLAAKVEEAVQVLKISKSNVSSPDSLHSSFLSAEVAVS 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 59998272 60001876 - Bda022370.1 Bda05g01200 7512
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01200 652 Pfam Poly-adenylate binding protein, unique domain 562 627 IPR002004 GO:0003723
Bda05g01200 652 SUPERFAMILY RNA-binding domain, RBD 315 406 IPR035979 GO:0003676
Bda05g01200 652 Coils Coil 286 313 - -
Bda05g01200 652 CDD RRM1_I_PABPs 13 91 - -
Bda05g01200 652 SMART poly_2 567 630 IPR002004 GO:0003723
Bda05g01200 652 PANTHER POLYADENYLATE-BINDING PROTEIN 125 527 - -
Bda05g01200 652 SMART rrm2_1 318 390 IPR003954 GO:0003676
Bda05g01200 652 SMART rrm2_1 215 287 IPR003954 GO:0003676
Bda05g01200 652 SMART rrm2_1 131 196 IPR003954 GO:0003676
Bda05g01200 652 PANTHER RNA BINDING PROTEIN 125 527 - -
Bda05g01200 652 PANTHER RNA BINDING PROTEIN 551 637 - -
Bda05g01200 652 PANTHER POLYADENYLATE-BINDING PROTEIN 10 109 - -
Bda05g01200 652 Gene3D - 4 102 IPR012677 -
Bda05g01200 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 317 394 IPR000504 GO:0003723
Bda05g01200 652 SUPERFAMILY PABC (PABP) domain 499 634 IPR036053 GO:0003723
Bda05g01200 652 PANTHER POLYADENYLATE-BINDING PROTEIN 551 637 - -
Bda05g01200 652 SMART rrm1_1 13 86 IPR000504 GO:0003723
Bda05g01200 652 SMART rrm1_1 215 287 IPR000504 GO:0003723
Bda05g01200 652 SMART rrm1_1 124 196 IPR000504 GO:0003723
Bda05g01200 652 SMART rrm1_1 318 390 IPR000504 GO:0003723
Bda05g01200 652 SUPERFAMILY RNA-binding domain, RBD 6 100 IPR035979 GO:0003676
Bda05g01200 652 Gene3D - 117 202 IPR012677 -
Bda05g01200 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 291 IPR000504 GO:0003723
Bda05g01200 652 CDD RRM4_I_PABPs 316 394 - -
Bda05g01200 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 123 200 IPR000504 GO:0003723
Bda05g01200 652 Gene3D - 203 306 IPR012677 -
Bda05g01200 652 Gene3D - 307 405 IPR012677 -
Bda05g01200 652 SUPERFAMILY RNA-binding domain, RBD 129 292 IPR035979 GO:0003676
Bda05g01200 652 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 12 90 IPR000504 GO:0003723
Bda05g01200 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 284 IPR000504 GO:0003723
Bda05g01200 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 319 387 IPR000504 GO:0003723
Bda05g01200 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 129 193 IPR000504 GO:0003723
Bda05g01200 652 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 14 83 IPR000504 GO:0003723
Bda05g01200 652 Gene3D - 554 645 - -
Bda05g01200 652 PANTHER RNA BINDING PROTEIN 10 109 - -
Bda05g01200 652 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 555 632 IPR002004 GO:0003723
Bda05g01200 652 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 125 628 IPR006515 GO:0003723
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01696 Bda05g01200 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01200 Bda-Chr5:59998272 Bda11g00858 Bda-Chr11:8470077 4.74E-147 dispersed
Bda03g01696 Bda-Chr3:56394646 Bda05g01200 Bda-Chr5:59998272 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01200 K13126 - vvi:100267544 718.768