Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01202 ATGCGACTTCCTTCTGATAACGCGGTTTCGAACAGCTCCAGCGCAGCAACTGAAGTCACATCTGTTGTGGCGGAGCCAAAACGTTCTTGGGCCGACGAAGCAGATGATCCGATTGAAGATACTGGAGATTCGACTTCGACTGTAGCCGAGGAAATCGATTCTCTTACAATTGAGGAGCAGAAAACACTCGATGAACCGGACGATTCTAACATCAGCGCTGTTACTTCTGGTGACACGCCATATACATCAGCAAGTACCTTTGAAGATTTGAATCTATCACCTGAGCTATTGAAGGGTTTATATGTTGACATGAAATTCCAGAAGCCTAGTAAAATTCAAGCTATCACCCTGCCAATGATTTTGACTCCTCCACACAAACATTTAGTTGCTCAAGCACACAATGGTTCTGGCAAGACAACTTGCTTTGTGCTTGGCATGTTGAGTCGTGTTGATCCAAATCTAAAGGCACCTCAAGCACTTTGTATCTGCCCTACAAGAGAGCTGGCTATTCAGAATATTGAAGTTCTTAAGAAGATGGGAAAGTATACTGGCATAACATCAGAGTGTGCTGTGCCAATGGAAAGTACAAATAATGTACCAATCCTAAAACGTGAACCTGTGTCTGCACAAGTAGTTATTGGAACTCCGGGGACAATAAAGAAATGGATTACATCCAAAAAATTGGGTGTGAGCTACATAAGGATTCTCGTTTTTGATGAGGCTGATCACATGCTCGCCGAGGATGGTTTTCAAGATGATTCAGTGAGAATAAGGAATCACATTGAAAAAAGTGGTTCCCAATGCCAGGTGCTTTTATTCTCAGCTACATTTAATGATGTAGTAAAAAAGTTCGTCTCAATAGTTGTTAGACAATACAATGAACTTTATGTGAAGAAAGAAGAACTATCTTTGGAAGGGGTGAAGCAGTATAAGGTGATCTGTCTCAATGAAGCTGCCAAAATTCAGGCTATTAAGGACAGAATTTTCGAATTGGGGGAGAATTTGGGGCAGACGATTATTTTTGTCCGCACAAGGAACAGTGCCAGTAGGTTGCACAAAGAACTAGTTAAATATGGTTATGATGTGACTACCATTCAAGGAGCTCTTAGGCATGAGGACAGAGACAAAATAGTCAAAGAGTTTAAAGATGGTTTGACTAAAGTTCTCATATCAACAGACCTTCTGGCTCGAGGTTTTGACCAACAACAGGTTAACCTGGTTATCAATTACGATCTTCCTGTGAAACATGAATCGACAAACAAAAGCTCTTTCCAGCCTGAACCTGATTATGAGGTGTATTTGCATAGGATTGGTAGGGCTGGGCGATTTGGCCGTAAAGGAGCTGTGTTTAACTTGATCTGTGGCCAAATGGACACAATGCTGATGGCGAAAATTCAGGAATATTTTGGCTCTCAAGTGACGGAGGTAAAGGTTCTTTACCATTAG 1446 41.63 MRLPSDNAVSNSSSAATEVTSVVAEPKRSWADEADDPIEDTGDSTSTVAEEIDSLTIEEQKTLDEPDDSNISAVTSGDTPYTSASTFEDLNLSPELLKGLYVDMKFQKPSKIQAITLPMILTPPHKHLVAQAHNGSGKTTCFVLGMLSRVDPNLKAPQALCICPTRELAIQNIEVLKKMGKYTGITSECAVPMESTNNVPILKREPVSAQVVIGTPGTIKKWITSKKLGVSYIRILVFDEADHMLAEDGFQDDSVRIRNHIEKSGSQCQVLLFSATFNDVVKKFVSIVVRQYNELYVKKEELSLEGVKQYKVICLNEAAKIQAIKDRIFELGENLGQTIIFVRTRNSASRLHKELVKYGYDVTTIQGALRHEDRDKIVKEFKDGLTKVLISTDLLARGFDQQQVNLVINYDLPVKHESTNKSSFQPEPDYEVYLHRIGRAGRFGRKGAVFNLICGQMDTMLMAKIQEYFGSQVTEVKVLYH 481
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60007131 60010387 + Bda022372.1 Bda05g01202 7514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01202 481 SMART ultradead3 105 310 IPR014001 -
Bda05g01202 481 Pfam DEAD/DEAH box helicase 111 283 IPR011545 GO:0003676|GO:0005524
Bda05g01202 481 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 119 295 IPR014001 -
Bda05g01202 481 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 85 114 IPR014014 GO:0003724
Bda05g01202 481 Gene3D - 302 479 IPR027417 -
Bda05g01202 481 MobiDBLite consensus disorder prediction 1 20 - -
Bda05g01202 481 SMART helicmild6 349 444 IPR001650 -
Bda05g01202 481 MobiDBLite consensus disorder prediction 67 83 - -
Bda05g01202 481 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 62 474 - -
Bda05g01202 481 Pfam Helicase conserved C-terminal domain 320 444 IPR001650 -
Bda05g01202 481 CDD DEADc_DDX19_DDX25 92 295 - -
Bda05g01202 481 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 157 456 IPR027417 -
Bda05g01202 481 PANTHER DEAD-BOX HELICASE DBP80 62 474 - -
Bda05g01202 481 MobiDBLite consensus disorder prediction 1 83 - -
Bda05g01202 481 CDD SF2_C_DEAD 307 453 - -
Bda05g01202 481 Gene3D - 65 301 IPR027417 -
Bda05g01202 481 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 481 IPR001650 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01202 Bda-Chr5:60007131 Bda05g00426 Bda-Chr5:49979059 3.29E-59 dispersed
Bda05g01202 Bda-Chr5:60007131 Bda10g00864 Bda-Chr10:43138489 1.23E-67 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01202 K18655 - pvy:116131273 689.108