Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01208 ATGAAACGCGAGTTATCGTTTCTGGTGGACGTTCGATCTCAAACGGACGAGTCATTAGGTCGGATTCGGGGTCCAACTCAGGTGGATGGAAATGCGAGTAATTGCATAGATGTGGCTTCGCCGGATGGTTTCTGCAAGAGATTTAAAGGTTCAGTGGTTAACGGTTTGATTGTTTATACGAGGCAAAGGAAGTCTCGTATCAATTTGTGTAATGGCTTTTCCGAGAATGATGAAAGCCACAAAACTAATAGCTTAGACGAGCTCGAGAACGGTCGGAGCTCTTCGCTTGAAGAAGTGAAAAAGATCGAAGAGGTTGAGATTGATAAGTACCGCAGAAATTTAGAATCTTCCATTTGTGAAAATGCGTTAGAGAATACGACACTGAAATCTCCAGTAAGAAGAGAAGCACAGAACGCTGGGGTTGAAATTGCTGACGATGAAGTGATAAAGAAAGATTTGCCTAGAAAGGTGCTTAGGCGATTTACGCGTTCGGCTTTGAGACCTGAGTTTGAGCGTACAGAGACATCCCCGACGAAAACAGAAACTGTTGGAAAAGAAGACATTTTGAGTATGGAAACAGAGACAGCTTCTCCGAAGTATAAGGTGGAAATGAGGATAGTGAAAAAGTCTGCCTCGAGCAAGAGTCTAATGACAGTGCGGGAGCTATTTGAAACTGGCTTTCTAGAAGGAGTATCTGTTGTATACGTGGGTAGCGGGAAGGGGATCGATTATGGTCTGCGTGGGACGATTAGAGGTGGTGGGATTTTATGCACGTGTTCATCCTGTAATGGATGCAAAGTTATTCCGCCATCCAAATTTGAGATTCATGCTTGCAAACAATACAAACGAGCCGCACAATATATATGCCTTGAAAATGGTACAAGCCTATTAGACTTGCTGAAGGCATGCAGGGGAAACGCTCTGCATAAACTGGAGGCGACAATTCGGAGTGTAGTCAATTCTTCTTCGGAAGAGAAAATTTTTACTTGCAGAATGTGTAAAGGGCGCTTTCCTTCATCATGTTTGGGCCAAGTTGGAGCTCTATGCACTTTGTGTGCAGAGTCGAAGAAATCTGAACCCATCCCAACCCCACAAACTCCACCGCCTTCTGCACCTGATAGGCCCAGGTCACCAGAGCCGGTCAAGATCTTGAAGTCCCCTCAAAGGACTCCATTGCATATATCTTCACAAAGTAGAAGTGAATCGATGATAAAAACAAAGTTACTTGCTACCATTTTAATCTTCTTCCACCCATTGTTCAGGTCACCAAAGCGAGTTATGACCTCAAAGTCCTCCCAGAGTGCCACGGTACATACCCAACCACAAAAACGGAGCTCTGGGAAGATAAAAAATAGGTTGTCAAATCCAAAGTCCATTTTAAAGTCCCTGAGAAGTGCTCCCAAATGCATTACTTCACAAAACAAAAGTCAATGGAAGTTAACGACAAAAGATCAACGTTTGCATAAGTTGGTCTTTGAGGAAGGTGGATTGCCTGAGGGAACTGAATTAGCATATTTTGCTCGAGGACAGAAATTGCTCCAAGGTTACAAGAAGGGTTCTGGAATTTTTTGTTGCTGCTGCAACTGTGAGGTTAGTCCTTCACAATTTGAAGTTCATGCTGGTTGGTCGTCTCGAAGAAAACCTTATGCATACATTTATACGTCAAATGGGGTGTCTCTCCATGAATTGGCAATCTCTCTCTCAAAAGGGCGTAAATATTCTGCCAATGATAATGATGACGTATGTATAATATGTCTAGATGGCGGGAATCTTCTGCTCTGTGATGGTTGCCCTAGGGCTTTCCACAAAGAATGTGCATCGCTTGCTATTATTCCTCGTGGAGATTGGTATTGTAAATTTTGTCAGAATATGTACCAAAGAGATAAATTTGTAGGGTATAATGAAAACGCTGTTGCTGCTGGGAGGACTTCTGGAGTTGATCCTATTGATGATATATCCAAAAGATGTATTCGAATAGTCAAAAATATTGAAACTGAACTTAGTGGATGCGTGTTATGCCGAGGGACTGATTTCAGCAAATCAGGATTTGGTCCTCGTACAATTATACTTTGTGATCAGTGTGAGAAGGAATTTCACGTTGGCTGTTTGAAGGACCATAAAATGGCATTTCTTAAGGAACTACCAAAAGGGAAGTGGTTTTGTGGCACAGATTGCACTAGCATACACTCTGCTCTGCAGAAGCTGCTTGTACGTGGGGAAGAGAAGGTTCCAGACCGTCTTTGTAGCGTTATGAACAAGAAACTTGTCGAGAAAGGCTTAGATACTGCTGATGATATTGATGTCAGATGGCAACTTATCAGTGGAAAAATTGCTTCGCCTGAAACTAGACCATTACTCTCAGAAGTTGTTGCCATCTTTCATGATTGCTTCGATCCTATAATTGACGGAACAAGTGGGCGCGACCTCATCCCGGCCATGGTTTATGGAAGGAATGTAGGGGGACAAGAGTTTGGGGGAATGTACTGTGCAATATTAATAGTCAACTCATCTGTTGTATCTGCTGCAATGCTTCGAGTTTTCGGCCGAGAACTTGCAGAACTACCCTTGGTTGCGACGACCAACATTAATCGAGGAAAGGGCTATTTTCAAATACTGTTCTCCTGTATTGAGCGGCTTCTTGCTTACTTACACGTGAAGAACCTTGTTCTCCCGGCTGCCGAAGAAGCCGAATCCATATGGACCGATAAATTCTCTTTTAAGAAAATTAAACCCGAACAGCTTAGCAATTACAGAAGAATTTGCTACCAAATGGTGACCTTCAAACGCACATCTATGCTTGAGAAGTTGGTTCCCTCATGCCGACTCGTCAATACATAA 2838 42.95 MKRELSFLVDVRSQTDESLGRIRGPTQVDGNASNCIDVASPDGFCKRFKGSVVNGLIVYTRQRKSRINLCNGFSENDESHKTNSLDELENGRSSSLEEVKKIEEVEIDKYRRNLESSICENALENTTLKSPVRREAQNAGVEIADDEVIKKDLPRKVLRRFTRSALRPEFERTETSPTKTETVGKEDILSMETETASPKYKVEMRIVKKSASSKSLMTVRELFETGFLEGVSVVYVGSGKGIDYGLRGTIRGGGILCTCSSCNGCKVIPPSKFEIHACKQYKRAAQYICLENGTSLLDLLKACRGNALHKLEATIRSVVNSSSEEKIFTCRMCKGRFPSSCLGQVGALCTLCAESKKSEPIPTPQTPPPSAPDRPRSPEPVKILKSPQRTPLHISSQSRSESMIKTKLLATILIFFHPLFRSPKRVMTSKSSQSATVHTQPQKRSSGKIKNRLSNPKSILKSLRSAPKCITSQNKSQWKLTTKDQRLHKLVFEEGGLPEGTELAYFARGQKLLQGYKKGSGIFCCCCNCEVSPSQFEVHAGWSSRRKPYAYIYTSNGVSLHELAISLSKGRKYSANDNDDVCIICLDGGNLLLCDGCPRAFHKECASLAIIPRGDWYCKFCQNMYQRDKFVGYNENAVAAGRTSGVDPIDDISKRCIRIVKNIETELSGCVLCRGTDFSKSGFGPRTIILCDQCEKEFHVGCLKDHKMAFLKELPKGKWFCGTDCTSIHSALQKLLVRGEEKVPDRLCSVMNKKLVEKGLDTADDIDVRWQLISGKIASPETRPLLSEVVAIFHDCFDPIIDGTSGRDLIPAMVYGRNVGGQEFGGMYCAILIVNSSVVSAAMLRVFGRELAELPLVATTNINRGKGYFQILFSCIERLLAYLHVKNLVLPAAEEAESIWTDKFSFKKIKPEQLSNYRRICYQMVTFKRTSMLEKLVPSCRLVNT 945
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60040519 60046286 + Bda022378.1 Bda05g01208 7520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01208 945 Coils Coil 85 105 - -
Bda05g01208 945 Pfam PHD-finger 582 623 IPR019787 -
Bda05g01208 945 SUPERFAMILY FYVE/PHD zinc finger 664 723 IPR011011 -
Bda05g01208 945 PANTHER ACYL-COA N-ACYLTRANSFERASE WITH RING/FYVE/PHD-TYPE ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 943 - -
Bda05g01208 945 SUPERFAMILY FYVE/PHD zinc finger 569 624 IPR011011 -
Bda05g01208 945 SMART PHD_3 669 726 IPR001965 -
Bda05g01208 945 SMART PHD_3 581 622 IPR001965 -
Bda05g01208 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 666 728 IPR013083 -
Bda05g01208 945 MobiDBLite consensus disorder prediction 427 454 - -
Bda05g01208 945 Pfam Tify domain binding domain 515 565 IPR032308 -
Bda05g01208 945 Pfam Tify domain binding domain 248 303 IPR032308 -
Bda05g01208 945 CDD PHD1_AIRE 582 621 - -
Bda05g01208 945 ProSiteProfiles Zinc finger PHD-type profile. 579 624 IPR019787 -
Bda05g01208 945 MobiDBLite consensus disorder prediction 357 399 - -
Bda05g01208 945 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 568 645 IPR013083 -
Bda05g01208 945 MobiDBLite consensus disorder prediction 361 376 - -
Bda05g01208 945 ProSitePatterns Zinc finger PHD-type signature. 582 621 IPR019786 -
Bda05g01208 945 PANTHER AUTOIMMUNE REGULATOR 1 943 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Bda03g01749 Bda05g01208 BCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01208 Bda-Chr5:60040519 Bda10g00577 Bda-Chr10:39749334 1.14E-44 dispersed
Bda14g00990 Bda-Chr14:8054012 Bda05g01208 Bda-Chr5:60040519 2.00E-07 dispersed
Bda03g01749 Bda-Chr3:56857825 Bda05g01208 Bda-Chr5:60040519 1.01E-12 transposed
Bda02g00726 Bda-Chr2:48115506 Bda05g01208 Bda-Chr5:60040519 8.82E-21 wgd
Bda03g01701 Bda-Chr3:56428546 Bda05g01208 Bda-Chr5:60040519 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15956 PF16135 TDBD 2.70E-12 No_clan Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01208 - - cpep:111800114 1136.32