Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01232 ATGGGAAATACTAGCAGCAGTGGAGCTAACGGTCGGAGGAGACACGGTAGCCGGCGGAGCCACCCAACTCCGCCTCCTCCGGCTGCACCACAACCCGAAATCACGGCTAACAGATATGTTTTCGCTGCTGCTACCCCATACCCGTCTCAGTATCCAAACCAACACCCATCATATTACCAATATCCGGCCTACTATCCGCCCCCGCCTCCTCCAACATCGATGCCGATGCCTTTGCCGGCGCCATACGATAACCACCACCGAGGAGCTCATCCCCACATGGATCCGGCGAATTGGGTCGGTGGGAGGTATCCTTATGGGCCAGTTATGCCTCCTCAAACGCCCTACGTAGAGCATCAGAAAGCAGTTACCATACGAAATGATGTCAACCTGAAGAAGGAGACTCTGAGGATTGAACCGGACAGCCAAAATCCTGGGAAGTTTCTCGTCACCTTTATGTTTGATGCAACGGTTCCCGGCAGCATCATTGTTATGTTCTTTGCAAAAGAAGGCGAAGGTTGTAATCTGACACCCATGAAGGAAGACGTTCTCAAACCGGTGACGGTAGACTTTGAGAAGGGCCTGGGGCAAAAGTTCAGGCAGCCCGTAGGAACAGGGATTGAACTGGCAACATTTGAGGAAGAGTTATTGAAATTAAGTGAGATGGATGTGTATCCTCTGGCAATAAAAGCAGAGGCTCTTCCAGACAATCAAACTGGTGCAGATGGGAGCCAAATACCAGGCACTAACAACTCTCAAATTACTCAGGCGGTGATCGAAAAAGACAGAGGTGAGTACCAGGTGAAAGTTTTGAAGCAGATTTTGTGGGTCAATAACATGAGATATGAGCTGCAAGAGATATTTGGGATTGGAAATTCAGTTGAGGGTGATGTTGATGGAAATGATCCCGGAAAAGAATGCGTCATTTGCTTGTCCGAACCACGGGACACCACTGTTCTTCCTTGCCGGCACATGTGCATGTGCAATGGCTGCGCAAAGGTTTTGAGGTTCCAGACGAATCGGTGCCCAATCTGCAGACAACCGGTCGACAGGCTTTTGGAGATCAAGGTGAGTGGTGGATCCGACGAA 1086 50.18 MGNTSSSGANGRRRHGSRRSHPTPPPPAAPQPEITANRYVFAAATPYPSQYPNQHPSYYQYPAYYPPPPPPTSMPMPLPAPYDNHHRGAHPHMDPANWVGGRYPYGPVMPPQTPYVEHQKAVTIRNDVNLKKETLRIEPDSQNPGKFLVTFMFDATVPGSIIVMFFAKEGEGCNLTPMKEDVLKPVTVDFEKGLGQKFRQPVGTGIELATFEEELLKLSEMDVYPLAIKAEALPDNQTGADGSQIPGTNNSQITQAVIEKDRGEYQVKVLKQILWVNNMRYELQEIFGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCNGCAKVLRFQTNRCPICRQPVDRLLEIKVSGGSDE 362
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 60205097 60207032 + Bda033682 Bda05g01232 7544
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01232 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 291 355 IPR013083 -
Bda05g01232 362 SUPERFAMILY RING/U-box 305 351 - -
Bda05g01232 362 SMART ring_2 306 344 IPR001841 -
Bda05g01232 362 Pfam Zinc finger, C3HC4 type (RING finger) 304 350 - -
Bda05g01232 362 PANTHER RING/U-BOX SUPERFAMILY PROTEIN-RELATED 1 362 - -
Bda05g01232 362 MobiDBLite consensus disorder prediction 1 37 - -
Bda05g01232 362 CDD mRING-HC-C3HC5_MGRN1_like---blasttree 305 345 IPR045195 -
Bda05g01232 362 PANTHER MAHOGUNIN 1 362 IPR045194 GO:0061630
Bda05g01232 362 ProSiteProfiles Zinc finger RING-type profile. 306 345 IPR001841 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01232 Bda-Chr5:60205097 Bda11g00635 Bda-Chr11:6347556 1.76E-08 dispersed
Bda13g00150 Bda-Chr13:1990607 Bda05g01232 Bda-Chr5:60205097 8.12E-06 dispersed
Bda05g01232 Bda-Chr5:60205097 Bda05g01235 Bda-Chr5:60224938 0 proximal
Bda01g00018 Bda-Chr1:608411 Bda05g01232 Bda-Chr5:60205097 8.39E-48 transposed
Bda01g00019 Bda-Chr1:610485 Bda05g01232 Bda-Chr5:60205097 9.07E-09 transposed
Bda03g01724 Bda-Chr3:56711076 Bda05g01232 Bda-Chr5:60205097 7.34E-125 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01232 - - mcha:111015152 551.977