Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01234 GCATCCAATAGGGGTCAAGGTGGCATCCAGCAATTGCTAGCTGCTGAACAAGAAGCTCAACACATAGTTAATGCCGCAAGAAATGGGAAAATGGCTAGACTAAAACAGGCCAAGGATGAGGCTGAGAAGGAGGTTGCAGAATATCGTGCTCAAGTGGAGTATGAGTTCCAGAAGAAACTCACTGAGAGTAGTGGAGACTCGGGGGCAAATGTCAAGCGGCTCGAACAAGAGACTGATGAAAAGATCCATCACTTGAAGAATGAGGCCTCGAGAATTTCGCATGATGTGGTCAGCATGCTCCTCAAACAGGTGACGACCGTGAGAAAT 327 47.71 ASNRGQGGIQQLLAAEQEAQHIVNAARNGKMARLKQAKDEAEKEVAEYRAQVEYEFQKKLTESSGDSGANVKRLEQETDEKIHHLKNEASRISHDVVSMLLKQVTTVRN 109
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
5 60220801 60221601 + Bda033684 Bda05g01234 7546

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01234 109 PANTHER V-TYPE PROTON ATPASE SUBUNIT G1 1 109 - -
Bda05g01234 109 Gene3D - 1 109 - -
Bda05g01234 109 Coils Coil 24 58 - -
Bda05g01234 109 TIGRFAM V_ATP_synt_G: V-type ATPase, G subunit 6 108 IPR005124 GO:0016471|GO:0046961|GO:1902600
Bda05g01234 109 Pfam Vacuolar (H+)-ATPase G subunit 6 107 IPR005124 GO:0016471|GO:0046961|GO:1902600
Bda05g01234 109 PANTHER VACUOLAR ATP SYNTHASE SUBUNIT G 1 109 IPR005124 GO:0016471|GO:0046961|GO:1902600
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01234 K02152 ATPeV1G, ATP6G; V-type H+-transporting ATPase subunit G - thj:104802409 181.415
       

Dupl-types


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01231 Bda-Chr5:60200982 Bda05g01234 Bda-Chr5:60220801 3.13E-75 proximal
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda08g01381 . 1 995 Primary Pumps ATPases(2) AT1G10130 81.7 0.0e+00 1607.0
Bda02g00785 BCT 1 813 Primary Pumps ATPases(2) AT2G28520 79.9 0.0e+00 1311.6
Bda09g01479 BCT 1 792 Primary Pumps ATPases(2) AT2G28520 77.4 0.0e+00 1249.2
Bda15g01074 BCT 10 787 Primary Pumps ATPases(2) AT2G28520 61.6 2.2e-282 968.4
Bda08g01248 . 1 803 Primary Pumps ATPases(2) AT2G28520 58.1 8.4e-274 939.9
Bda14g00572 BCT 723 1464 Primary Pumps ATPases(2) AT2G28520 55.5 1.4e-239 826.2
Bda15g01074 BCT 6 792 Primary Pumps ATPases(2) AT2G21410 74.4 0.0e+00 1198.7
Bda08g01248 . 1 807 Primary Pumps ATPases(2) AT2G21410 66.5 0.0e+00 1089.3
Bda02g00785 BCT 9 818 Primary Pumps ATPases(2) AT2G21410 63.2 4.0e-300 1027.3
Bda14g00572 BCT 684 1467 Primary Pumps ATPases(2) AT2G21410 64.7 3.8e-298 1020.8
Bda09g01479 BCT 9 797 Primary Pumps ATPases(2) AT2G21410 59.8 1.2e-283 972.6
Bda15g01074 BCT 8 792 Primary Pumps ATPases(2) AT4G39080 75.4 0.0e+00 1204.1
Bda08g01248 . 1 807 Primary Pumps ATPases(2) AT4G39080 67.7 0.0e+00 1100.9
Bda02g00785 BCT 9 818 Primary Pumps ATPases(2) AT4G39080 63.7 2.2e-298 1021.5
Bda14g00572 BCT 723 1467 Primary Pumps ATPases(2) AT4G39080 67.7 3.8e-298 1020.8
Bda09g01479 BCT 9 797 Primary Pumps ATPases(2) AT4G39080 60.3 1.6e-280 962.2
Bda06g00898 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.8e-61 230.3
Bda01g01524 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.8e-61 230.3
Bda08g01232 BCT 29 166 Primary Pumps ATPases(2) AT4G34720 100.0 5.8e-61 230.3
Bda08g00963 . 28 158 Primary Pumps ATPases(2) AT4G34720 100.0 6.6e-57 216.9
Bda06g00898 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.8e-67 250.8
Bda08g01232 BCT 3 166 Primary Pumps ATPases(2) AT1G75630 81.3 5.8e-67 250.8
Bda01g01524 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.6e-67 250.4
Bda08g00963 . 2 158 Primary Pumps ATPases(2) AT1G75630 80.6 6.6e-63 237.3
Bda06g00898 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bda08g01232 BCT 4 166 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bda01g01524 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.4e-74 275.0
Bda08g00963 . 3 158 Primary Pumps ATPases(2) AT2G16510 100.0 2.1e-70 261.9
Bda06g00898 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bda08g00963 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bda08g01232 BCT 2 123 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bda01g01524 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.4e-52 202.2
Bda03g00060 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 6.3e-70 260.8
Bda01g00727 BCT,CCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 3.1e-69 258.5
Bda06g00898 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bda01g01524 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bda08g01232 BCT 29 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bda08g00963 . 28 158 Primary Pumps ATPases(2) AT4G38920 100.0 1.9e-56 215.3
Bda03g00060 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 7.9e-67 250.4
Bda01g00727 BCT,CCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 3.9e-66 248.1
Bda02g00797 BCT 1 1079 Primary Pumps ATPases(2) AT1G07810 80.1 0.0e+00 1684.5
Bda09g01488 BCT 1 562 Primary Pumps ATPases(2) AT1G07810 83.3 6.9e-268 920.6
Bda02g00797 BCT 1 1079 Primary Pumps ATPases(2) AT1G07670 79.9 0.0e+00 1688.3
Bda09g01488 BCT 1 562 Primary Pumps ATPases(2) AT1G07670 82.4 2.9e-266 915.2
Bda08g01381 . 1 995 Primary Pumps ATPases(2) AT1G10130 81.7 0.0e+00 1607.0
Bda02g00797 BCT 21 1060 Primary Pumps ATPases(2) AT4G00900 65.1 0.0e+00 1312.0
Bda09g01488 BCT 3 543 Primary Pumps ATPases(2) AT4G00900 69.7 6.1e-216 748.0
Bda10g00567 . 1 126 Primary Pumps ATPases(2) AT4G02620 78.6 4.7e-54 207.2
Bda10g00546 . 1 126 Primary Pumps ATPases(2) AT4G02620 77.8 1.0e-53 206.1
Bda14g00625 BCT 6 485 Primary Pumps ATPases(2) AT1G76030 95.8 3.5e-267 917.1
Bda15g01024 BCT 6 449 Primary Pumps ATPases(2) AT1G76030 79.2 7.6e-214 740.0
Bda05g01234 . 2 109 Primary Pumps ATPases(2) AT3G01390 81.5 8.2e-39 156.4
Bda05g01231 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.1e-38 154.5
Bda13g01891 . 1 369 Primary Pumps ATPases(2) AT1G12840 78.4 3.4e-169 591.3
Bda15g00861 . 1 261 Primary Pumps ATPases(2) AT3G58730 83.1 1.6e-117 419.1
Bda14g01434 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.3 8.8e-116 413.3
Bda05g00903 . 5 448 Primary Pumps ATPases(2) AT3G42050 77.9 7.4e-200 693.3
Bda05g00910 . 5 452 Primary Pumps ATPases(2) AT3G42050 77.0 6.9e-198 686.8
Bda06g00898 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bda08g01232 BCT 4 166 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bda01g01524 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.4e-74 275.0
Bda08g00963 . 3 158 Primary Pumps ATPases(2) AT2G16510 100.0 2.1e-70 261.9
Bda14g00625 BCT 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 3.4e-270 927.2
Bda15g01024 BCT 1 449 Primary Pumps ATPases(2) AT4G38510 79.2 1.2e-214 742.7
Bda08g00489 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 74.6 2.9e-68 255.0
Bda06g00135 BCT 1 139 Primary Pumps ATPases(2) AT1G64200 81.6 4.1e-54 208.0
Bda14g00625 BCT 9 485 Primary Pumps ATPases(2) AT1G20260 96.2 1.0e-266 915.6
Bda15g01024 BCT 9 449 Primary Pumps ATPases(2) AT1G20260 79.6 1.0e-213 739.6
Bda02g00785 BCT 1 813 Primary Pumps ATPases(2) AT2G28520 79.9 0.0e+00 1311.6
Bda09g01479 BCT 1 792 Primary Pumps ATPases(2) AT2G28520 77.4 0.0e+00 1249.2
Bda15g01074 BCT 10 787 Primary Pumps ATPases(2) AT2G28520 61.6 2.2e-282 968.4
Bda08g01248 . 1 803 Primary Pumps ATPases(2) AT2G28520 58.1 8.4e-274 939.9
Bda14g00572 BCT 723 1464 Primary Pumps ATPases(2) AT2G28520 55.5 1.4e-239 826.2
Bda14g01132 . 1 431 Primary Pumps ATPases(2) AT3G28715 55.5 1.0e-132 469.9
Bda08g00489 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 78.2 1.9e-90 328.9
Bda06g00135 BCT 1 139 Primary Pumps ATPases(2) AT4G11150 85.6 4.3e-58 221.5
Bda04g00964 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.6 0.0e+00 1174.8
Bda10g00910 . 1 624 Primary Pumps ATPases(2) AT1G78900 93.1 0.0e+00 1166.0
Bda14g00625 BCT 6 485 Primary Pumps ATPases(2) AT1G76030 95.8 3.5e-267 917.1
Bda15g01024 BCT 6 449 Primary Pumps ATPases(2) AT1G76030 79.2 7.6e-214 740.0
Bda14g00625 BCT 1 488 Primary Pumps ATPases(2) AT4G38510 95.7 3.4e-270 927.2
Bda15g01024 BCT 1 449 Primary Pumps ATPases(2) AT4G38510 79.2 1.2e-214 742.7
Bda14g00625 BCT 9 485 Primary Pumps ATPases(2) AT1G20260 96.2 1.0e-266 915.6
Bda15g01024 BCT 9 449 Primary Pumps ATPases(2) AT1G20260 79.6 1.0e-213 739.6
Bda13g01891 . 1 369 Primary Pumps ATPases(2) AT1G12840 78.4 3.4e-169 591.3
Bda15g00861 . 1 261 Primary Pumps ATPases(2) AT3G58730 83.1 1.6e-117 419.1
Bda14g01434 . 1 260 Primary Pumps ATPases(2) AT3G58730 82.3 8.8e-116 413.3
Bda08g00489 BCT 1 220 Primary Pumps ATPases(2) AT4G11150 78.2 1.9e-90 328.9
Bda06g00135 BCT 1 139 Primary Pumps ATPases(2) AT4G11150 85.6 4.3e-58 221.5
Bda08g00489 BCT 1 220 Primary Pumps ATPases(2) AT3G08560 67.6 2.5e-77 285.4
Bda06g00135 BCT 1 138 Primary Pumps ATPases(2) AT3G08560 75.4 7.5e-50 194.1
Bda08g00489 BCT 1 183 Primary Pumps ATPases(2) AT1G64200 74.6 2.9e-68 255.0
Bda06g00135 BCT 1 139 Primary Pumps ATPases(2) AT1G64200 81.6 4.1e-54 208.0
Bda10g00567 . 1 126 Primary Pumps ATPases(2) AT4G02620 78.6 4.7e-54 207.2
Bda10g00546 . 1 126 Primary Pumps ATPases(2) AT4G02620 77.8 1.0e-53 206.1
Bda05g01234 . 2 109 Primary Pumps ATPases(2) AT3G01390 81.5 8.2e-39 156.4
Bda05g01231 . 2 109 Primary Pumps ATPases(2) AT3G01390 80.6 3.1e-38 154.5
Bda05g00903 . 5 448 Primary Pumps ATPases(2) AT3G42050 77.9 7.4e-200 693.3
Bda05g00910 . 5 452 Primary Pumps ATPases(2) AT3G42050 77.0 6.9e-198 686.8
Bda02g00785 BCT 1 813 Primary Pumps ATPases(2) AT2G28520 79.9 0.0e+00 1311.6
Bda09g01479 BCT 1 792 Primary Pumps ATPases(2) AT2G28520 77.4 0.0e+00 1249.2
Bda15g01074 BCT 10 787 Primary Pumps ATPases(2) AT2G28520 61.6 2.2e-282 968.4
Bda08g01248 . 1 803 Primary Pumps ATPases(2) AT2G28520 58.1 8.4e-274 939.9
Bda14g00572 BCT 723 1464 Primary Pumps ATPases(2) AT2G28520 55.5 1.4e-239 826.2
Bda15g01074 BCT 6 792 Primary Pumps ATPases(2) AT2G21410 74.4 0.0e+00 1198.7
Bda08g01248 . 1 807 Primary Pumps ATPases(2) AT2G21410 66.5 0.0e+00 1089.3
Bda02g00785 BCT 9 818 Primary Pumps ATPases(2) AT2G21410 63.2 4.0e-300 1027.3
Bda14g00572 BCT 684 1467 Primary Pumps ATPases(2) AT2G21410 64.7 3.8e-298 1020.8
Bda09g01479 BCT 9 797 Primary Pumps ATPases(2) AT2G21410 59.8 1.2e-283 972.6
Bda15g01074 BCT 8 792 Primary Pumps ATPases(2) AT4G39080 75.4 0.0e+00 1204.1
Bda08g01248 . 1 807 Primary Pumps ATPases(2) AT4G39080 67.7 0.0e+00 1100.9
Bda02g00785 BCT 9 818 Primary Pumps ATPases(2) AT4G39080 63.7 2.2e-298 1021.5
Bda14g00572 BCT 723 1467 Primary Pumps ATPases(2) AT4G39080 67.7 3.8e-298 1020.8
Bda09g01479 BCT 9 797 Primary Pumps ATPases(2) AT4G39080 60.3 1.6e-280 962.2
Bda06g00898 . 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.8e-61 230.3
Bda01g01524 BCT 28 165 Primary Pumps ATPases(2) AT4G34720 100.0 5.8e-61 230.3
Bda08g01232 BCT 29 166 Primary Pumps ATPases(2) AT4G34720 100.0 5.8e-61 230.3
Bda08g00963 . 28 158 Primary Pumps ATPases(2) AT4G34720 100.0 6.6e-57 216.9
Bda06g00898 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bda08g00963 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bda08g01232 BCT 2 123 Primary Pumps ATPases(2) AT1G19910 98.4 1.1e-52 202.6
Bda01g01524 BCT 1 122 Primary Pumps ATPases(2) AT1G19910 97.5 1.4e-52 202.2
Bda06g00898 . 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bda01g01524 BCT 28 165 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bda08g01232 BCT 29 166 Primary Pumps ATPases(2) AT4G38920 100.0 1.6e-60 228.8
Bda08g00963 . 28 158 Primary Pumps ATPases(2) AT4G38920 100.0 1.9e-56 215.3
Bda06g00898 . 2 165 Primary Pumps ATPases(2) AT1G75630 81.3 5.8e-67 250.8
Bda08g01232 BCT 3 166 Primary Pumps ATPases(2) AT1G75630 81.3 5.8e-67 250.8
Bda01g01524 BCT 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 7.6e-67 250.4
Bda08g00963 . 2 158 Primary Pumps ATPases(2) AT1G75630 80.6 6.6e-63 237.3
Bda06g00898 . 3 165 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bda08g01232 BCT 4 166 Primary Pumps ATPases(2) AT2G16510 100.0 1.8e-74 275.4
Bda01g01524 BCT 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 2.4e-74 275.0
Bda08g00963 . 3 158 Primary Pumps ATPases(2) AT2G16510 100.0 2.1e-70 261.9
Bda03g00060 BCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 7.9e-67 250.4
Bda01g00727 BCT,CCT 1 180 Primary Pumps ATPases(2) AT4G32530 69.0 3.9e-66 248.1
Bda03g00060 BCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 6.3e-70 260.8
Bda01g00727 BCT,CCT 1 180 Primary Pumps ATPases(2) AT2G25610 86.7 3.1e-69 258.5
Bda14g01132 . 1 431 Primary Pumps ATPases(2) AT3G28710 57.2 9.0e-140 493.4
Bda14g01132 . 1 431 Primary Pumps ATPases(2) AT3G28715 55.5 1.0e-132 469.9
Bda02g00797 BCT 1 1079 Primary Pumps ATPases(2) AT1G07810 80.1 0.0e+00 1684.5
Bda09g01488 BCT 1 562 Primary Pumps ATPases(2) AT1G07810 83.3 6.9e-268 920.6
Bda02g00797 BCT 21 1060 Primary Pumps ATPases(2) AT4G00900 65.1 0.0e+00 1312.0
Bda09g01488 BCT 3 543 Primary Pumps ATPases(2) AT4G00900 69.7 6.1e-216 748.0
Bda08g01381 . 1 995 Primary Pumps ATPases(2) AT1G10130 81.7 0.0e+00 1607.0
Bda02g00797 BCT 1 1079 Primary Pumps ATPases(2) AT1G07670 79.9 0.0e+00 1688.3
Bda09g01488 BCT 1 562 Primary Pumps ATPases(2) AT1G07670 82.4 2.9e-266 915.2
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001804 2 5 1 1 0 2 3 2 1 2 0 2 1 2 2 2 2 2 3 2 2 3 1 2 2 0 2 2 8 3 62
       

Transcriptome


Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g01234 Bda_Chr05 FPKM 7.900725 8.51195 20.786505 19.716436 23.852018 14.84901 22.398726 39.874733 37.31348