Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bda05g01235 | ATGGGAAATACTAGCAGCAGTGGAGCTAACGGTCGGAGGAGACACGGTAGCCGGCGGAGCCACCCAACTCCGCCTCCTCCGGCTGCACCACAACCCGAAATCACGGCTAACAGATATGTTTTCGCTGCTGCTACCCCATACCCGTCTCAGTATCCAAACCAACACCCATCATATTACCAATATCCGGCCTACTATCCGCCCCCGCCTCCTCCAACATCGATGCCGATGCCTTTGCCGGCGCCATACGATAACCACCACCGAGGAGCTCATCCCCACATGGATCCGGCGAATTGGGTCGGTGGGAGGTATCCTTATGGGCCAGTTATGCCTCCTCAAACGCCCTACGTAGAGCATCAGAAAGCAGTTACCATACGAAATGATGTCAACCTGAAGAAGGAGACTCTGAGGATTGAACCGGACAGCCAAAATCCTGGGAAGTTTCTCGTCACCTTTATGTTTGATGCAACGGTTCCCGGCAGCATCATTGTTATGTTCTTTGCAAAAGAAGGCGAAGGTTGTAATCTGACACCCATGAAGGAAGACGTTCTCAAACCGGTGACGGTAGACTTTGAGAAGGGCCTGGGGCAAAAGTTCAGGCAGCCCGTAGGAACAGGGATTGAACTGGCAACATTTGAGGAAGAGTTATTGAAATTAAGTGAGATGGATGTGTATCCTCTGGCAATAAAAGCAGAGGCTCTTCCAGACAATCAAACTGGTGCAGATGGAAGCCAAATACCAGGCACTAACAACTCTCAAATTACTCAGGCGGTGATCGAAAAAGACAGAGGTGAGTACCAGGTGAAAGTTTTGAAGCAGATTTTGTGGGTCAATAACATGAGATATGAGCTGCAAGAGATATTTGGGATTGGAAATTCAGTTGAGGGTGATGTTGATGGAAATGATCCCGGAAAAGAATGCGTCATTTGCTTGTCCGAACCACGGGACACCACTGTTCTTCCTTGCCGGCACATGTGCATGTGCAATGGCTGCGCAAAGGTTTTGAGGTTCCAGACGAATCGGTGCCCAATCTGCAGACAACCGGTCGACAGGCTTTTGGAGATCAAGGTGAGTGGTGGATCCGACGAA | 1086 | 50.09 | MGNTSSSGANGRRRHGSRRSHPTPPPPAAPQPEITANRYVFAAATPYPSQYPNQHPSYYQYPAYYPPPPPPTSMPMPLPAPYDNHHRGAHPHMDPANWVGGRYPYGPVMPPQTPYVEHQKAVTIRNDVNLKKETLRIEPDSQNPGKFLVTFMFDATVPGSIIVMFFAKEGEGCNLTPMKEDVLKPVTVDFEKGLGQKFRQPVGTGIELATFEEELLKLSEMDVYPLAIKAEALPDNQTGADGSQIPGTNNSQITQAVIEKDRGEYQVKVLKQILWVNNMRYELQEIFGIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCNGCAKVLRFQTNRCPICRQPVDRLLEIKVSGGSDE | 362 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 5 | 60224938 | 60226872 | + | Bda033685 | Bda05g01235 | 7547 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bda05g01235 | 362 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 291 | 355 | IPR013083 | - | |
| Bda05g01235 | 362 | SUPERFAMILY | RING/U-box | 305 | 351 | - | - | |
| Bda05g01235 | 362 | SMART | ring_2 | 306 | 344 | IPR001841 | - | |
| Bda05g01235 | 362 | Pfam | Zinc finger, C3HC4 type (RING finger) | 304 | 350 | - | - | |
| Bda05g01235 | 362 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN-RELATED | 1 | 362 | - | - | |
| Bda05g01235 | 362 | MobiDBLite | consensus disorder prediction | 1 | 37 | - | - | |
| Bda05g01235 | 362 | CDD | mRING-HC-C3HC5_MGRN1_like---blasttree | 305 | 345 | IPR045195 | - | |
| Bda05g01235 | 362 | PANTHER | MAHOGUNIN | 1 | 362 | IPR045194 | GO:0061630 | |
| Bda05g01235 | 362 | ProSiteProfiles | Zinc finger RING-type profile. | 306 | 345 | IPR001841 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Bda01g00018 | Bda-Chr1:608411 | Bda05g01235 | Bda-Chr5:60224938 | 8.39E-48 | dispersed | |
| Bda01g00019 | Bda-Chr1:610485 | Bda05g01235 | Bda-Chr5:60224938 | 9.07E-09 | dispersed | |
| Bda03g01724 | Bda-Chr3:56711076 | Bda05g01235 | Bda-Chr5:60224938 | 7.34E-125 | dispersed | |
| Bda05g01235 | Bda-Chr5:60224938 | Bda11g00635 | Bda-Chr11:6347556 | 1.76E-08 | dispersed | |
| Bda05g01232 | Bda-Chr5:60205097 | Bda05g01235 | Bda-Chr5:60224938 | 0 | proximal |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Bda05g01235 | - | - | mcha:111015152 | 551.977 |