Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01256 ATGTATCATCACAATCATCTACAACAGCAGCAGCAACATCAAGGAAAGAACATACACTCTTCTACAAAGATGCCCCTAATTCCAGAGAGACACTTTATTGTGCAAGGTGCTAATGGCCCTGGAGATTCAGGACTTGTGCTCTCCACTGACGCCAAGCCTCGTTTAAAGTGGACCCACGAACTCCATGAGCGTTTCATTGAAGCAGTCTGTCAGCTTGGTGGAGCTGAGAAAGCAACACCCAAGACTGTGATGAAAGTAATGGGTATACCTGGACTTACTTTGTATCACTTAAAGAGTCATCTTCAGAAGTACAGGCTGAGCAAGAACGTGCATGGGCAACCTAATAGCGAGACCAACAAAATTGGTGCGGTTGCAGTGGCTGAAAGCAGACTGATAGAAGCCAACAGAAGTCACACCGACAACTTCAGTGCTGCGTCTCAGACCAACAATTGCAGTGGGGTTGGGAACTCAAGAAGCTTAGAGATAAGTGAAGCTCTACAGATGCAAATTGAAGTGCAGAGAAGGCTGCACGAGCAGCTTGAGGTACAGCGACACCTGCAGCTGAGGATAGAAGCCCAGGGAAAGTACCTGCAGTCGGTGTTAGAGAAAGCGCAGGAGACGTTAGGAAGGCAGAACATCGGCGCCGTCGGACTTGAAACCGCCAAGGTCCAACTATCAGAGCTGGTTTCGAAAGTATCAATGCAGTGCCTCGCCGGTGAATTTCCGGAGCTGCAGAGGCTTTACCCCCAGTCCGTCCAACCTCCGGATGGCTCATTTGAGAGCTGTCTGACATGCTGCGAAGGATCCCTGACGGACCCCGAATTACACAACGGGAGTTTGGGTAATGTTGGCGGCGTTCGGTTGGACACAAAAGATAATGCGGAAGGGTGGAGTGAGGTCCTGAAAGAGACGGTGTTTTTGTCTTCGATGGGGAAGGTAGGCGAAAGATCAAACAGGAGAAGTGGCGGAGACTTGTCGATGAATATCGGGCGGTATCTAGAGGAAAAGGAGGGAAGCAACGACGTGATGAGGGAAGGAGGGTCCCAGTGGAAGGGAGGGAGAGTCAGAAGAAGAGAGGAAAGCTTCTGGAAGAGGGAGGAGTCAGTGAAAGAGAAACAAGGAGAGAAGGAGAAAGGGTGGTCAACGGCCCTGGACCTGAATGCGGGGGAGGATGAAAATGGAAGCTGTTCGGAAAGCAAGCAGCTGGACTTGAATGGGTTCAGCTGGGACTAG 1233 50.61 MYHHNHLQQQQQHQGKNIHSSTKMPLIPERHFIVQGANGPGDSGLVLSTDAKPRLKWTHELHERFIEAVCQLGGAEKATPKTVMKVMGIPGLTLYHLKSHLQKYRLSKNVHGQPNSETNKIGAVAVAESRLIEANRSHTDNFSAASQTNNCSGVGNSRSLEISEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNIGAVGLETAKVQLSELVSKVSMQCLAGEFPELQRLYPQSVQPPDGSFESCLTCCEGSLTDPELHNGSLGNVGGVRLDTKDNAEGWSEVLKETVFLSSMGKVGERSNRRSGGDLSMNIGRYLEEKEGSNDVMREGGSQWKGGRVRRREESFWKREESVKEKQGEKEKGWSTALDLNAGEDENGSCSESKQLDLNGFSWD 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60368937 60370745 + Bda022420.1 Bda05g01256 7568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01256 410 MobiDBLite consensus disorder prediction 361 410 - -
Bda05g01256 410 Pfam Myb-like DNA-binding domain 54 105 IPR001005 -
Bda05g01256 410 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 107 IPR006447 GO:0003677
Bda05g01256 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 109 IPR017930 -
Bda05g01256 410 MobiDBLite consensus disorder prediction 392 410 - -
Bda05g01256 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 409 IPR044848 GO:0003700
Bda05g01256 410 PANTHER MYB-RELATED PROTEIN 2 10 409 - -
Bda05g01256 410 Pfam MYB-CC type transfactor, LHEQLE motif 161 207 IPR025756 -
Bda05g01256 410 Coils Coil 163 183 - -
Bda05g01256 410 MobiDBLite consensus disorder prediction 361 379 - -
Bda05g01256 410 Gene3D - 51 109 - -
Bda05g01256 410 SUPERFAMILY Homeodomain-like 51 107 IPR009057 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01256 Bda-Chr5:60368937 Bda11g00350 Bda-Chr11:3890043 5.05E-59 dispersed
Bda07g01469 Bda-Chr7:27375516 Bda05g01256 Bda-Chr5:60368937 3.26E-17 dispersed
Bda05g01256 Bda-Chr5:60368937 Bda13g00487 Bda-Chr13:5755722 4.57E-60 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15961 PF00249 Myb_DNA-binding 2.60E-07 CL0123 Bda TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01256 - - cpap:110816961 430.639