Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda05g01256 ATGTATCATCACAATCATCTACAACAGCAGCAGCAACATCAAGGAAAGAACATACACTCTTCTACAAAGATGCCCCTAATTCCAGAGAGACACTTTATTGTGCAAGGTGCTAATGGCCCTGGAGATTCAGGACTTGTGCTCTCCACTGACGCCAAGCCTCGTTTAAAGTGGACCCACGAACTCCATGAGCGTTTCATTGAAGCAGTCTGTCAGCTTGGTGGAGCTGAGAAAGCAACACCCAAGACTGTGATGAAAGTAATGGGTATACCTGGACTTACTTTGTATCACTTAAAGAGTCATCTTCAGAAGTACAGGCTGAGCAAGAACGTGCATGGGCAACCTAATAGCGAGACCAACAAAATTGGTGCGGTTGCAGTGGCTGAAAGCAGACTGATAGAAGCCAACAGAAGTCACACCGACAACTTCAGTGCTGCGTCTCAGACCAACAATTGCAGTGGGGTTGGGAACTCAAGAAGCTTAGAGATAAGTGAAGCTCTACAGATGCAAATTGAAGTGCAGAGAAGGCTGCACGAGCAGCTTGAGGTACAGCGACACCTGCAGCTGAGGATAGAAGCCCAGGGAAAGTACCTGCAGTCGGTGTTAGAGAAAGCGCAGGAGACGTTAGGAAGGCAGAACATCGGCGCCGTCGGACTTGAAACCGCCAAGGTCCAACTATCAGAGCTGGTTTCGAAAGTATCAATGCAGTGCCTCGCCGGTGAATTTCCGGAGCTGCAGAGGCTTTACCCCCAGTCCGTCCAACCTCCGGATGGCTCATTTGAGAGCTGTCTGACATGCTGCGAAGGATCCCTGACGGACCCCGAATTACACAACGGGAGTTTGGGTAATGTTGGCGGCGTTCGGTTGGACACAAAAGATAATGCGGAAGGGTGGAGTGAGGTCCTGAAAGAGACGGTGTTTTTGTCTTCGATGGGGAAGGTAGGCGAAAGATCAAACAGGAGAAGTGGCGGAGACTTGTCGATGAATATCGGGCGGTATCTAGAGGAAAAGGAGGGAAGCAACGACGTGATGAGGGAAGGAGGGTCCCAGTGGAAGGGAGGGAGAGTCAGAAGAAGAGAGGAAAGCTTCTGGAAGAGGGAGGAGTCAGTGAAAGAGAAACAAGGAGAGAAGGAGAAAGGGTGGTCAACGGCCCTGGACCTGAATGCGGGGGAGGATGAAAATGGAAGCTGTTCGGAAAGCAAGCAGCTGGACTTGAATGGGTTCAGCTGGGACTAG 1233 50.61 MYHHNHLQQQQQHQGKNIHSSTKMPLIPERHFIVQGANGPGDSGLVLSTDAKPRLKWTHELHERFIEAVCQLGGAEKATPKTVMKVMGIPGLTLYHLKSHLQKYRLSKNVHGQPNSETNKIGAVAVAESRLIEANRSHTDNFSAASQTNNCSGVGNSRSLEISEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNIGAVGLETAKVQLSELVSKVSMQCLAGEFPELQRLYPQSVQPPDGSFESCLTCCEGSLTDPELHNGSLGNVGGVRLDTKDNAEGWSEVLKETVFLSSMGKVGERSNRRSGGDLSMNIGRYLEEKEGSNDVMREGGSQWKGGRVRRREESFWKREESVKEKQGEKEKGWSTALDLNAGEDENGSCSESKQLDLNGFSWD 410
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 60368937 60370745 + Bda022420.1 Bda05g01256 7568

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda05g01256 410 MobiDBLite consensus disorder prediction 361 410 - -
Bda05g01256 410 Pfam Myb-like DNA-binding domain 54 105 IPR001005 -
Bda05g01256 410 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 52 107 IPR006447 GO:0003677
Bda05g01256 410 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 109 IPR017930 -
Bda05g01256 410 MobiDBLite consensus disorder prediction 392 410 - -
Bda05g01256 410 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 409 IPR044848 GO:0003700
Bda05g01256 410 PANTHER MYB-RELATED PROTEIN 2 10 409 - -
Bda05g01256 410 Pfam MYB-CC type transfactor, LHEQLE motif 161 207 IPR025756 -
Bda05g01256 410 Coils Coil 163 183 - -
Bda05g01256 410 MobiDBLite consensus disorder prediction 361 379 - -
Bda05g01256 410 Gene3D - 51 109 - -
Bda05g01256 410 SUPERFAMILY Homeodomain-like 51 107 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda05g01256 - - - cpap:110816961 430.639
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda05g01256 Bda-Chr5:60368937 Bda11g00350 Bda-Chr11:3890043 5.05E-59 dispersed
Bda07g01469 Bda-Chr7:27375516 Bda05g01256 Bda-Chr5:60368937 3.26E-17 dispersed
Bda05g01256 Bda-Chr5:60368937 Bda13g00487 Bda-Chr13:5755722 4.57E-60 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g1362 . . . . . Bpe03g01302 . . Cmo06g01724 Cmo14g01154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme04g01787 Blo07g01419 . . Bda05g01256 . . . . . . . . . . . . . Bhi11g01506 . . . . . . Cla10g01268 Cam10g1350 Cec10g1341 Cco10g1314 Clacu10g1325 Cmu10g2094 Cre10g1479 . Csa03g04029 Chy04g01368 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda13g01813 . 1 248 G2-like Transcription Factor Family AT5G16560 51.1 9.3e-48 188.0
Bda01g02090 CCT 10 246 G2-like Transcription Factor Family AT1G25550 54.7 6.8e-58 221.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT1G25550 58.6 1.4e-55 213.4
Bda07g01528 CCT 13 299 G2-like Transcription Factor Family AT1G68670 51.6 2.7e-67 252.7
Bda01g02090 CCT 10 279 G2-like Transcription Factor Family AT1G68670 53.2 2.5e-65 246.1
Bda07g01528 CCT 13 245 G2-like Transcription Factor Family AT3G25790 51.6 6.8e-44 174.5
Bda09g01515 . 1 269 G2-like Transcription Factor Family AT3G46640 52.6 1.5e-64 243.4
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT5G05090 53.6 5.5e-73 271.2
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT5G05090 51.6 9.1e-68 253.8
Bda11g00350 . 12 312 G2-like Transcription Factor Family AT4G13640 54.2 4.8e-62 235.0
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT4G13640 54.6 1.2e-57 220.3
Bda11g00350 . 12 265 G2-like Transcription Factor Family AT3G24120 61.4 7.8e-76 280.8
Bda13g00487 . 12 310 G2-like Transcription Factor Family AT3G24120 53.3 3.5e-68 255.4
Bda14g00491 . 23 174 G2-like Transcription Factor Family AT3G24120 60.4 4.8e-41 165.2
Bda05g01256 . 45 274 G2-like Transcription Factor Family AT1G69580 51.7 5.9e-40 161.8
Bda14g00491 . 1 279 G2-like Transcription Factor Family AT1G79430 53.9 2.0e-70 263.1
Bda11g00350 . 24 200 G2-like Transcription Factor Family AT1G79430 56.4 4.5e-38 155.6
Bda13g00487 . 36 189 G2-like Transcription Factor Family AT1G79430 64.1 1.9e-36 150.2
Bda09g01572 . 56 269 G2-like Transcription Factor Family AT2G01060 68.7 6.2e-60 227.6
Bda11g00695 . 1 306 G2-like Transcription Factor Family AT3G10760 65.7 1.9e-94 342.8
Bda03g00582 . 1 308 G2-like Transcription Factor Family AT3G10760 64.8 3.3e-91 332.0
Bda11g00695 . 1 208 G2-like Transcription Factor Family AT2G40970 63.6 9.7e-64 240.4
Bda03g00582 . 1 208 G2-like Transcription Factor Family AT2G40970 64.6 2.6e-61 232.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003788 1 3 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 0 1 1 1 1 1 5 2 1 44
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15961 PF00249 Myb_DNA-binding 2.60E-07 CL0123 Bda TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda05g01256 Bda_Chr05 FPKM 14.432722 21.163647 13.471653 0.0 8.976714 7.580542 5.834858 8.855784 8.05807