Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00001 ATGGGGAAGCAAGGACCTTGCTGTCACTGTGGAGTTACTAGCACTCCCCTCTGGCGTAATGGGCCTCCAGATAAGCCTGTCCTCTGCAATGCATGTGGGTCTAGATGGAGGACAAAGGGAACACTTGCAAACTATACTCCTCTTCATGCACGTGCTGATCCCGATTTCGAAGATCATGGAATTTCCCGGGTGAAGTACCTGCCTGTAAATAAGAAAAAAGAAGCGAAACTGCAAAAAAGAAAGCGGCAAAATGATAATGGAATGGTTGGAGACATTTTTCTCAACGATTATCGCTGTTTCAGCAGCATTATGGATGAAGATACGAGTAATAGATCGAGTTCTGGATCAGCCATTTCCAATTCTGAGAGCTCTGCACAATTTGGCAGTGCAGATGCTAGTGATTTGACAGGACCAGCTCAGTCAATCATTTGGGATACAATGGTGCCGTCGAGGAAGAGGACATGCACGGGCCGACCAAAGCCATCTTCCGTCGAAAAACTTACAAAAGATCTCTATACTCTTTTACACAAACAACAGTCATATTTTTCGGGTTCTTCTGAAGAAGATCTGCTATTTGAGGGTGGAAAGCCATTAGTCTCGGCTGAGATAGTCCATGGGAGTGTTCTCATGATAAATCCGAGCTCAATAGCTCGAGAAGAGGAATCCGAAGCTAGCTCCCTTTCAGTTGAAAATAAACATTATTCTCAGAATGAGGCCTATTCTTATCCTCCTAATTATTCTGCGCGTAATGAAAATCAGAGCAATAATTCAAGATTTTCGACCCCGAGCAGTGGATTGTTAAAGTGCGGAGACCCACTAAAAAGGGATAACTCTCAGCAAGAAAAACTACAAATTATGGCAAACCGGAGCTCTCCTTTATGCGATGTTGATTTAAGTGATGTGGTGAACTATGAAGAGTTTAAGAGGCAATTGACAAATGAAGAACAACAACAACTACTCAAGTATCTGCCTCCTACCGATGCTGCTAAGCTCGCCGACGGAGTTATTTTGCATTCAGATTCAAGAATGACTACGATGAAGAGCACAAAAGGGCCTATGATCTCGAAAGCAAGCTTTGAAAATAAGGAATACCTAGATAATGAAGGTTCTTGCTTCAGTCCGACAAGCCTCTTCGCCTTACCTCCGGAAGGAAGCTCACTCAGTAAAAATGGGGAAGAATACGCAGGAGATATAAGCTCGAAGAAGAAGCTTTCAGATCAATATGGTTATCCAAGTGGGCAAAAAAAGGAATCTTTTGTGTCTTCTGAAATTTTGTCTGACAGGATTGTTGTGCAAGCTTTGATGGCCTCCTCAAATTGTCCATGGAGGCAGGGTAAATCTTTAAAAAGGCTGGAAAGTGGTATTAGTAAAATAGGTCAAGCGAAGAAATATGTCGCAAAACCGGTTGGGAATATTAAATTTTTTGCAAGAGCAAAGGACGAAGATAAAGATTTTGAAGGAAAATTTTTGGGTAAGAAATCTAAAATGTCATCAAATGCTACTCATGGAGGCACAGTTCAGCTTGTAATTAGAGAGGAAGATATGTTTGAACGTGATAATGATATGTCGGAACTTAAAAGTGATGACTTTCATGTCGGTCGAAGTAATCGTGCTTATGATGTGAGTGTTACTCCGTTTGGTCAACGGAGTCTGAATGGAAATTCCCTTGATAGTGATGCTATCGTTCCCAGAACGAAGGTCAGAGAGACATTACGTTTGTTTCACGCTTTGTGTCGGAAGCTTTTGCAGGAAGAGGAAGCACAATCTAAAAAAGCAGGAAACACTCATAAGAGGGTAGACCTTCAAGCTGCAAAAATTCTCAAGGACAAGAGGAAATATGTTAATGAAGGCAAACAAATTTTAGGATCTGTTCCCGGAGTTGAAGTTGGTGATGAATTTCGTTATAGAGTAGAACTCAATATTATTGGTCTTCATCGCCAAATTCAGGGTGGTATAGATTATGTGAAACATGATGGGAAGATCTTGGCGACTAGTATTGTGGCTTCAGGGGGATATTCAGATGATCTAGATTGCTCAGATACTTTGGTTTATACAGGTCAGGGTGGAAACGTGATGTATTCAGGTAAAGAACCTGAAGATCAAAAGCTTGAACGAGGAAACCTTGCCCTCAAGAATAGTTTGGATGAAAGAAATTCGGTCAGGGTGATCCGAGGGTCCGATGTATCTGAGGGAAGAACATACGTTTATGATGGGCTCTATTTAGTGGACAAATGGTGGCAGGATGTGGGGCCTCACGGTAAGCTTGTATTTAAATTTCTATTAAACAGAATTCCAAATCAACCAGAACTCGCCTGGAAGGAAGTTAAAAAGTCGAAAAAATTTAAAGTGCGCGAAGGTCTCTGTGTAGATGACATCTCTCAAGGGAAAGAGTGTTTTCCAATCAGCGCTGTGAACACTGTAGATGATGAGAAACCCCCGCCCTTTACATACATAACAAGAATCATATATCCTGATTGGTGCCACCCTGTTCCTCCCAAGGGTTGTGATTGCACCAATAGGTGCTCAGACTCATGTTCTTGTGCAGTTAAGAATGGAGGAGAATTACCATATAATTATAATGAGGCTATTGTTGAAGCAAAGCCCCTCGTCTATGAGTGTGGTCCTTCATGCAAGTGTCCATCTTCTTGCTGGAATCGTGTCAGTCAGAAAGGTATCAAATTTCAGCTTGAAATTTTTAAAACCAAATCAAGGGGATGGGGTGTGAGGTCTCTCAATTCAATCCCTTCAGGAAGTTTTATATGCGAGTATGTTGGAGAGATTATCGACGAAAAAGAAGCTGAACAAAGAAGTAATGATGAGTATCTGTTTGATATTGGTAATAATTACACTGATAGTTCCCTATGGGATGGACTTTCAACTCTAATGCCCGAAATCCAAGCAAGTTCTTCCAAAGAAGTTGAAGAGGGAAACTTTACCATTGATGCAGCCGAGTTTGGCAATGTGGGCAGATTTATAAACCATTGTTGCTCTCCCAATCTGTATGCACAAAATGTTCTGTATGATTATGAGGATAAACGGGTTCCTCACATAATGCTCTTCGCTGCTGAGAATATTCCTCCCTTGCAAGAGCTGACTTACCATTACAATTATGTCATAGATCAGGTTCGAGATTCCGATGGTAATATTAAGAAGAAGAGTTGTTATTGCGGTTCTGTTGAGTGCACGGGTAGGATGTATTAA 3201 41.36 MGKQGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDFEDHGISRVKYLPVNKKKEAKLQKRKRQNDNGMVGDIFLNDYRCFSSIMDEDTSNRSSSGSAISNSESSAQFGSADASDLTGPAQSIIWDTMVPSRKRTCTGRPKPSSVEKLTKDLYTLLHKQQSYFSGSSEEDLLFEGGKPLVSAEIVHGSVLMINPSSIAREEESEASSLSVENKHYSQNEAYSYPPNYSARNENQSNNSRFSTPSSGLLKCGDPLKRDNSQQEKLQIMANRSSPLCDVDLSDVVNYEEFKRQLTNEEQQQLLKYLPPTDAAKLADGVILHSDSRMTTMKSTKGPMISKASFENKEYLDNEGSCFSPTSLFALPPEGSSLSKNGEEYAGDISSKKKLSDQYGYPSGQKKESFVSSEILSDRIVVQALMASSNCPWRQGKSLKRLESGISKIGQAKKYVAKPVGNIKFFARAKDEDKDFEGKFLGKKSKMSSNATHGGTVQLVIREEDMFERDNDMSELKSDDFHVGRSNRAYDVSVTPFGQRSLNGNSLDSDAIVPRTKVRETLRLFHALCRKLLQEEEAQSKKAGNTHKRVDLQAAKILKDKRKYVNEGKQILGSVPGVEVGDEFRYRVELNIIGLHRQIQGGIDYVKHDGKILATSIVASGGYSDDLDCSDTLVYTGQGGNVMYSGKEPEDQKLERGNLALKNSLDERNSVRVIRGSDVSEGRTYVYDGLYLVDKWWQDVGPHGKLVFKFLLNRIPNQPELAWKEVKKSKKFKVREGLCVDDISQGKECFPISAVNTVDDEKPPPFTYITRIIYPDWCHPVPPKGCDCTNRCSDSCSCAVKNGGELPYNYNEAIVEAKPLVYECGPSCKCPSSCWNRVSQKGIKFQLEIFKTKSRGWGVRSLNSIPSGSFICEYVGEIIDEKEAEQRSNDEYLFDIGNNYTDSSLWDGLSTLMPEIQASSSKEVEEGNFTIDAAEFGNVGRFINHCCSPNLYAQNVLYDYEDKRVPHIMLFAAENIPPLQELTYHYNYVIDQVRDSDGNIKKKSCYCGSVECTGRMY 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2001 14408 - Bda023163.1 Bda06g00001 7583
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00001 1066 SMART G9a_1 617 767 IPR003105 -
Bda06g00001 1066 Gene3D SET domain 784 1066 IPR046341 -
Bda06g00001 1066 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 SMART set_7 894 1042 IPR001214 GO:0005515
Bda06g00001 1066 Pfam Pre-SET motif 792 886 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda06g00001 1066 SUPERFAMILY PUA domain-like 603 777 IPR015947 -
Bda06g00001 1066 MobiDBLite consensus disorder prediction 238 264 - -
Bda06g00001 1066 Pfam SET domain 905 1036 IPR001214 GO:0005515
Bda06g00001 1066 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 483 1065 - -
Bda06g00001 1066 ProSiteProfiles SET domain profile. 894 1036 IPR001214 GO:0005515
Bda06g00001 1066 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 SUPERFAMILY SET domain 779 1042 IPR046341 -
Bda06g00001 1066 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 SMART PostSET_3 1050 1066 IPR003616 -
Bda06g00001 1066 ProSiteProfiles Post-SET domain profile. 1050 1066 IPR003616 -
Bda06g00001 1066 ProSiteProfiles YDG domain profile. 622 763 IPR003105 -
Bda06g00001 1066 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Bda06g00001 1066 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Bda06g00001 1066 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 84 1066 IPR025794 GO:0016571
Bda06g00001 1066 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 MobiDBLite consensus disorder prediction 238 278 - -
Bda06g00001 1066 SMART preset_2 789 878 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda06g00001 1066 Gene3D - 603 783 IPR036987 -
Bda06g00001 1066 ProSiteProfiles Pre-SET domain profile. 833 891 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda06g00001 1066 CDD SET_AtSUVH-like 813 1037 - -
Bda06g00001 1066 Pfam SAD/SRA domain 621 767 IPR003105 -
Bda06g00001 1066 Pfam Asx homology domain 278 345 IPR028020 -
Bda06g00001 1066 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 483 1065 - -
Bda06g00001 1066 MobiDBLite consensus disorder prediction 110 134 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00542 Bda-Chr3:4523804 Bda06g00001 Bda-Chr6:2001 1.79E-116 dispersed
Bda04g00312 Bda-Chr4:46775280 Bda06g00001 Bda-Chr6:2001 3.43E-32 dispersed
Bda06g00001 Bda-Chr6:2001 Bda08g00604 Bda-Chr8:6176492 1.73E-10 dispersed
Bda07g00134 Bda-Chr7:1680693 Bda06g00001 Bda-Chr6:2001 3.94E-27 dispersed
Bda07g01169 Bda-Chr7:13937038 Bda06g00001 Bda-Chr6:2001 8.20E-28 dispersed
Bda06g00001 Bda-Chr6:2001 Bda13g01887 Bda-Chr13:43246664 5.03E-112 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15963 PF02182 SAD_SRA 4.40E-48 CL0178 Bda TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00001 K11420 - jre:108991569 919.842