Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bda06g00001 ATGGGGAAGCAAGGACCTTGCTGTCACTGTGGAGTTACTAGCACTCCCCTCTGGCGTAATGGGCCTCCAGATAAGCCTGTCCTCTGCAATGCATGTGGGTCTAGATGGAGGACAAAGGGAACACTTGCAAACTATACTCCTCTTCATGCACGTGCTGATCCCGATTTCGAAGATCATGGAATTTCCCGGGTGAAGTACCTGCCTGTAAATAAGAAAAAAGAAGCGAAACTGCAAAAAAGAAAGCGGCAAAATGATAATGGAATGGTTGGAGACATTTTTCTCAACGATTATCGCTGTTTCAGCAGCATTATGGATGAAGATACGAGTAATAGATCGAGTTCTGGATCAGCCATTTCCAATTCTGAGAGCTCTGCACAATTTGGCAGTGCAGATGCTAGTGATTTGACAGGACCAGCTCAGTCAATCATTTGGGATACAATGGTGCCGTCGAGGAAGAGGACATGCACGGGCCGACCAAAGCCATCTTCCGTCGAAAAACTTACAAAAGATCTCTATACTCTTTTACACAAACAACAGTCATATTTTTCGGGTTCTTCTGAAGAAGATCTGCTATTTGAGGGTGGAAAGCCATTAGTCTCGGCTGAGATAGTCCATGGGAGTGTTCTCATGATAAATCCGAGCTCAATAGCTCGAGAAGAGGAATCCGAAGCTAGCTCCCTTTCAGTTGAAAATAAACATTATTCTCAGAATGAGGCCTATTCTTATCCTCCTAATTATTCTGCGCGTAATGAAAATCAGAGCAATAATTCAAGATTTTCGACCCCGAGCAGTGGATTGTTAAAGTGCGGAGACCCACTAAAAAGGGATAACTCTCAGCAAGAAAAACTACAAATTATGGCAAACCGGAGCTCTCCTTTATGCGATGTTGATTTAAGTGATGTGGTGAACTATGAAGAGTTTAAGAGGCAATTGACAAATGAAGAACAACAACAACTACTCAAGTATCTGCCTCCTACCGATGCTGCTAAGCTCGCCGACGGAGTTATTTTGCATTCAGATTCAAGAATGACTACGATGAAGAGCACAAAAGGGCCTATGATCTCGAAAGCAAGCTTTGAAAATAAGGAATACCTAGATAATGAAGGTTCTTGCTTCAGTCCGACAAGCCTCTTCGCCTTACCTCCGGAAGGAAGCTCACTCAGTAAAAATGGGGAAGAATACGCAGGAGATATAAGCTCGAAGAAGAAGCTTTCAGATCAATATGGTTATCCAAGTGGGCAAAAAAAGGAATCTTTTGTGTCTTCTGAAATTTTGTCTGACAGGATTGTTGTGCAAGCTTTGATGGCCTCCTCAAATTGTCCATGGAGGCAGGGTAAATCTTTAAAAAGGCTGGAAAGTGGTATTAGTAAAATAGGTCAAGCGAAGAAATATGTCGCAAAACCGGTTGGGAATATTAAATTTTTTGCAAGAGCAAAGGACGAAGATAAAGATTTTGAAGGAAAATTTTTGGGTAAGAAATCTAAAATGTCATCAAATGCTACTCATGGAGGCACAGTTCAGCTTGTAATTAGAGAGGAAGATATGTTTGAACGTGATAATGATATGTCGGAACTTAAAAGTGATGACTTTCATGTCGGTCGAAGTAATCGTGCTTATGATGTGAGTGTTACTCCGTTTGGTCAACGGAGTCTGAATGGAAATTCCCTTGATAGTGATGCTATCGTTCCCAGAACGAAGGTCAGAGAGACATTACGTTTGTTTCACGCTTTGTGTCGGAAGCTTTTGCAGGAAGAGGAAGCACAATCTAAAAAAGCAGGAAACACTCATAAGAGGGTAGACCTTCAAGCTGCAAAAATTCTCAAGGACAAGAGGAAATATGTTAATGAAGGCAAACAAATTTTAGGATCTGTTCCCGGAGTTGAAGTTGGTGATGAATTTCGTTATAGAGTAGAACTCAATATTATTGGTCTTCATCGCCAAATTCAGGGTGGTATAGATTATGTGAAACATGATGGGAAGATCTTGGCGACTAGTATTGTGGCTTCAGGGGGATATTCAGATGATCTAGATTGCTCAGATACTTTGGTTTATACAGGTCAGGGTGGAAACGTGATGTATTCAGGTAAAGAACCTGAAGATCAAAAGCTTGAACGAGGAAACCTTGCCCTCAAGAATAGTTTGGATGAAAGAAATTCGGTCAGGGTGATCCGAGGGTCCGATGTATCTGAGGGAAGAACATACGTTTATGATGGGCTCTATTTAGTGGACAAATGGTGGCAGGATGTGGGGCCTCACGGTAAGCTTGTATTTAAATTTCTATTAAACAGAATTCCAAATCAACCAGAACTCGCCTGGAAGGAAGTTAAAAAGTCGAAAAAATTTAAAGTGCGCGAAGGTCTCTGTGTAGATGACATCTCTCAAGGGAAAGAGTGTTTTCCAATCAGCGCTGTGAACACTGTAGATGATGAGAAACCCCCGCCCTTTACATACATAACAAGAATCATATATCCTGATTGGTGCCACCCTGTTCCTCCCAAGGGTTGTGATTGCACCAATAGGTGCTCAGACTCATGTTCTTGTGCAGTTAAGAATGGAGGAGAATTACCATATAATTATAATGAGGCTATTGTTGAAGCAAAGCCCCTCGTCTATGAGTGTGGTCCTTCATGCAAGTGTCCATCTTCTTGCTGGAATCGTGTCAGTCAGAAAGGTATCAAATTTCAGCTTGAAATTTTTAAAACCAAATCAAGGGGATGGGGTGTGAGGTCTCTCAATTCAATCCCTTCAGGAAGTTTTATATGCGAGTATGTTGGAGAGATTATCGACGAAAAAGAAGCTGAACAAAGAAGTAATGATGAGTATCTGTTTGATATTGGTAATAATTACACTGATAGTTCCCTATGGGATGGACTTTCAACTCTAATGCCCGAAATCCAAGCAAGTTCTTCCAAAGAAGTTGAAGAGGGAAACTTTACCATTGATGCAGCCGAGTTTGGCAATGTGGGCAGATTTATAAACCATTGTTGCTCTCCCAATCTGTATGCACAAAATGTTCTGTATGATTATGAGGATAAACGGGTTCCTCACATAATGCTCTTCGCTGCTGAGAATATTCCTCCCTTGCAAGAGCTGACTTACCATTACAATTATGTCATAGATCAGGTTCGAGATTCCGATGGTAATATTAAGAAGAAGAGTTGTTATTGCGGTTCTGTTGAGTGCACGGGTAGGATGTATTAA 3201 41.36 MGKQGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDFEDHGISRVKYLPVNKKKEAKLQKRKRQNDNGMVGDIFLNDYRCFSSIMDEDTSNRSSSGSAISNSESSAQFGSADASDLTGPAQSIIWDTMVPSRKRTCTGRPKPSSVEKLTKDLYTLLHKQQSYFSGSSEEDLLFEGGKPLVSAEIVHGSVLMINPSSIAREEESEASSLSVENKHYSQNEAYSYPPNYSARNENQSNNSRFSTPSSGLLKCGDPLKRDNSQQEKLQIMANRSSPLCDVDLSDVVNYEEFKRQLTNEEQQQLLKYLPPTDAAKLADGVILHSDSRMTTMKSTKGPMISKASFENKEYLDNEGSCFSPTSLFALPPEGSSLSKNGEEYAGDISSKKKLSDQYGYPSGQKKESFVSSEILSDRIVVQALMASSNCPWRQGKSLKRLESGISKIGQAKKYVAKPVGNIKFFARAKDEDKDFEGKFLGKKSKMSSNATHGGTVQLVIREEDMFERDNDMSELKSDDFHVGRSNRAYDVSVTPFGQRSLNGNSLDSDAIVPRTKVRETLRLFHALCRKLLQEEEAQSKKAGNTHKRVDLQAAKILKDKRKYVNEGKQILGSVPGVEVGDEFRYRVELNIIGLHRQIQGGIDYVKHDGKILATSIVASGGYSDDLDCSDTLVYTGQGGNVMYSGKEPEDQKLERGNLALKNSLDERNSVRVIRGSDVSEGRTYVYDGLYLVDKWWQDVGPHGKLVFKFLLNRIPNQPELAWKEVKKSKKFKVREGLCVDDISQGKECFPISAVNTVDDEKPPPFTYITRIIYPDWCHPVPPKGCDCTNRCSDSCSCAVKNGGELPYNYNEAIVEAKPLVYECGPSCKCPSSCWNRVSQKGIKFQLEIFKTKSRGWGVRSLNSIPSGSFICEYVGEIIDEKEAEQRSNDEYLFDIGNNYTDSSLWDGLSTLMPEIQASSSKEVEEGNFTIDAAEFGNVGRFINHCCSPNLYAQNVLYDYEDKRVPHIMLFAAENIPPLQELTYHYNYVIDQVRDSDGNIKKKSCYCGSVECTGRMY 1066
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2001 14408 - Bda023163.1 Bda06g00001 7583

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Bda06g00001 1066 SMART G9a_1 617 767 IPR003105 -
Bda06g00001 1066 Gene3D SET domain 784 1066 IPR046341 -
Bda06g00001 1066 CDD ZnF_GATA 6 51 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 SMART set_7 894 1042 IPR001214 GO:0005515
Bda06g00001 1066 Pfam Pre-SET motif 792 886 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda06g00001 1066 SUPERFAMILY PUA domain-like 603 777 IPR015947 -
Bda06g00001 1066 MobiDBLite consensus disorder prediction 238 264 - -
Bda06g00001 1066 Pfam SET domain 905 1036 IPR001214 GO:0005515
Bda06g00001 1066 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6-LIKE ISOFORM X1 483 1065 - -
Bda06g00001 1066 ProSiteProfiles SET domain profile. 894 1036 IPR001214 GO:0005515
Bda06g00001 1066 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 SUPERFAMILY SET domain 779 1042 IPR046341 -
Bda06g00001 1066 SMART GATA_3 1 55 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 SMART PostSET_3 1050 1066 IPR003616 -
Bda06g00001 1066 ProSiteProfiles Post-SET domain profile. 1050 1066 IPR003616 -
Bda06g00001 1066 ProSiteProfiles YDG domain profile. 622 763 IPR003105 -
Bda06g00001 1066 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Bda06g00001 1066 Gene3D - 3 87 IPR013088 GO:0006355|GO:0008270
Bda06g00001 1066 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 84 1066 IPR025794 GO:0016571
Bda06g00001 1066 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Bda06g00001 1066 MobiDBLite consensus disorder prediction 238 278 - -
Bda06g00001 1066 SMART preset_2 789 878 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda06g00001 1066 Gene3D - 603 783 IPR036987 -
Bda06g00001 1066 ProSiteProfiles Pre-SET domain profile. 833 891 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Bda06g00001 1066 CDD SET_AtSUVH-like 813 1037 - -
Bda06g00001 1066 Pfam SAD/SRA domain 621 767 IPR003105 -
Bda06g00001 1066 Pfam Asx homology domain 278 345 IPR028020 -
Bda06g00001 1066 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 483 1065 - -
Bda06g00001 1066 MobiDBLite consensus disorder prediction 110 134 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bda06g00001 K11420 EHMT; [histone H3]-lysine9 N-trimethyltransferase EHMT [EC:2.1.1.355] - jre:108991569 919.842
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Bda03g00542 Bda-Chr3:4523804 Bda06g00001 Bda-Chr6:2001 1.79E-116 dispersed
Bda04g00312 Bda-Chr4:46775280 Bda06g00001 Bda-Chr6:2001 3.43E-32 dispersed
Bda06g00001 Bda-Chr6:2001 Bda08g00604 Bda-Chr8:6176492 1.73E-10 dispersed
Bda07g00134 Bda-Chr7:1680693 Bda06g00001 Bda-Chr6:2001 3.94E-27 dispersed
Bda07g01169 Bda-Chr7:13937038 Bda06g00001 Bda-Chr6:2001 8.20E-28 dispersed
Bda06g00001 Bda-Chr6:2001 Bda13g01887 Bda-Chr13:43246664 5.03E-112 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Bda03g00433 . 75 291 C2C2-Gata Transcription Factor Family AT5G25830 51.4 4.8e-58 221.9
Bda09g00660 . 76 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 4.0e-49 192.2
Bda09g00212 . 74 275 C2C2-Gata Transcription Factor Family AT5G25830 51.1 9.0e-49 191.0
Bda03g01053 BCT 1 240 C2C2-Gata Transcription Factor Family AT3G60530 51.4 3.7e-52 201.8
Bda04g00030 CCT,ECH 38 205 C2C2-Gata Transcription Factor Family AT5G66320 58.2 5.8e-43 171.8
Bda14g00992 . 2 173 C2C2-Gata Transcription Factor Family AT5G66320 55.7 4.1e-41 165.6
Bda14g00992 . 8 173 C2C2-Gata Transcription Factor Family AT3G51080 60.5 2.9e-41 166.0
Bda04g00030 CCT,ECH 38 185 C2C2-Gata Transcription Factor Family AT3G51080 63.9 7.2e-40 161.4
Bda06g00001 . 1 328 C2C2-Gata Transcription Factor Family AT4G17570 57.2 3.9e-91 332.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007773 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 0 1 1 1 3 0 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
15963 PF02182 SAD_SRA 4.40E-48 CL0178 Bda TR
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Bda06g00001 Bda_Chr06 FPKM 10.709904 9.561659 14.555037 12.555354 19.406208 19.091583 17.253082 18.026344 18.21612